BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0662900 Os06g0662900|Os06g0662900
         (140 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20560.1  | chr1:7119927-7121730 REVERSE LENGTH=557             50   4e-07
AT1G66120.1  | chr1:24612640-24614690 FORWARD LENGTH=573           49   7e-07

>AT1G20560.1 | chr1:7119927-7121730 REVERSE LENGTH=557
          Length = 556

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 98  MEGAVLCAANHAPLTPITFLDRAALVYPDRPAIVASSSGLT 138
           MEG +   AN+ PLTPI+FLDR+A+VY DR +IV  S   T
Sbjct: 3   MEGTIKSPANYVPLTPISFLDRSAVVYADRVSIVYGSVKYT 43



>AT1G66120.1 | chr1:24612640-24614690 FORWARD LENGTH=573
          Length = 572

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/41 (51%), Positives = 28/41 (68%)

Query: 98  MEGAVLCAANHAPLTPITFLDRAALVYPDRPAIVASSSGLT 138
           M+  VLC AN+ PLTPITFL RA+  YP+R +I+   +  T
Sbjct: 1   MDNLVLCEANNVPLTPITFLKRASECYPNRTSIIYGQTRFT 41



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,271,316
Number of extensions: 65605
Number of successful extensions: 190
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 2
Length of query: 140
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 52
Effective length of database: 8,693,961
Effective search space: 452085972
Effective search space used: 452085972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)