Os06g0650900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ family protein.
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Os06g0650900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 373.17 | 0.908 | 10 | -0.812 | 1.84 | -2.72 | 3.82 | 5.09 | -0.156 | 9.88 | 25.3 | 1170 | -- | -- |
| 380.27 | 0.908 | 10.2 | -2.02 | 1.68 | -2.39 | 3.52 | -- | -0.451 | 10 | 25.12 | 1059 | -- | -- |
| 427.75 | 0.963 | 10 | -0.798 | 1.87 | -2.73 | -- | 4.35 | -0.194 | 9.5 | 25.4 | 1168 | -- | -- |
| 425.26 | 0.96 | 10.2 | -1.86 | 1.63 | -2.5 | -- | -- | -0.437 | 9.83 | 25.1 | 1036 | -- | -- |
| 525.18 | 1.07 | 10.1 | -0.587 | -- | -4.06 | -- | 5.35 | -0.00181 | -- | 24.45 | 869 | -- | -- |
| 546.3 | 1.1 | 10.2 | -2.7 | 2.21 | -- | 3.91 | -- | -0.665 | 10.3 | -- | -- | -- | -- |
| 607.87 | 1.15 | 10.2 | -2.55 | 2.2 | -- | -- | -- | -0.657 | 10.2 | -- | -- | -- | -- |
| 526.43 | 1.07 | 10.2 | -1.68 | -- | -3.62 | -- | -- | -0.278 | -- | 24.4 | 866 | -- | -- |
| 510.15 | 1.05 | 10.1 | -- | 1.53 | -2.99 | -- | -- | -0.169 | 9.76 | 24.91 | 1037 | -- | -- |
| 901.15 | 1.4 | 10.3 | -2.58 | -- | -- | -- | -- | -0.661 | -- | -- | -- | -- | -- |
| 778.74 | 1.31 | 10.1 | -- | 2.21 | -- | -- | -- | -0.373 | 10.3 | -- | -- | -- | -- |
| 596.05 | 1.14 | 10.1 | -- | -- | -3.98 | -- | -- | -0.0294 | -- | 24.14 | 872 | -- | -- |
| 1076.42 | 1.53 | 10.2 | -- | -- | -- | -- | -- | -0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 363.18 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 3 | 366.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 31 | 377.61 | temperature | 25 | 1440 | > th | dose dependent | sin | 3 | NA |
| 33 | 377.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 35 | 377.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 9 |
| 159 | 380.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 22 |
| 192 | 380.58 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 222 | 381.14 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 270 | 382.12 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 281 | 382.42 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 319 | 383.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 322 | 383.20 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 329 | 383.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 334 | 383.68 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 337 | 383.74 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 452 | 383.94 | temperature | 25 | 720 | > th | dose dependent | sin | 10 | NA |
| 459 | 384.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 465 | 384.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 467 | 384.27 | temperature | 30 | 1440 | > th | dose independent | sin | 19 | NA |
| 473 | 384.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 476 | 384.34 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 482 | 384.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 483 | 384.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 486 | 384.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 488 | 384.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 523 | 385.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 528 | 385.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 533 | 385.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 534 | 385.11 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 536 | 385.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 538 | 385.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 543 | 385.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 544 | 385.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 554 | 385.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 556 | 385.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 21 |
| 557 | 385.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 559 | 385.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 19 |
| 565 | 385.25 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 572 | 385.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 585 | 385.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 606 | 385.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 608 | 385.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 615 | 385.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 16 |
| 634 | 385.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 701 | 386.10 | temperature | 30 | 1440 | < th | dose independent | sin | 20 | NA |
| 721 | 386.33 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 740 | 386.48 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 762 | 386.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 764 | 386.61 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 815 | 386.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 6 |