BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0650900 Os06g0650900|AK107961
(142 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80920.1 | chr1:30403863-30404549 REVERSE LENGTH=164 71 2e-13
AT2G33735.1 | chr2:14268532-14269394 REVERSE LENGTH=120 54 2e-08
AT5G59610.1 | chr5:24013165-24014954 FORWARD LENGTH=269 53 5e-08
AT1G72070.1 | chr1:27118851-27119608 REVERSE LENGTH=127 52 8e-08
AT1G80030.1 | chr1:30105398-30108873 REVERSE LENGTH=501 52 1e-07
AT5G18140.1 | chr5:5998235-5999699 FORWARD LENGTH=334 52 1e-07
AT2G22360.1 | chr2:9498162-9500459 FORWARD LENGTH=443 51 2e-07
AT4G39960.1 | chr4:18534194-18536320 FORWARD LENGTH=448 51 2e-07
AT1G28210.2 | chr1:9854598-9859977 FORWARD LENGTH=428 50 3e-07
AT2G41000.2 | chr2:17111673-17112532 FORWARD LENGTH=212 50 4e-07
AT3G17830.1 | chr3:6101868-6104503 FORWARD LENGTH=518 50 6e-07
AT1G79940.1 | chr1:30070023-30073237 FORWARD LENGTH=688 49 8e-07
AT3G62600.1 | chr3:23151038-23153346 REVERSE LENGTH=347 48 2e-06
>AT1G80920.1 | chr1:30403863-30404549 REVERSE LENGTH=164
Length = 163
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Query: 48 DHYRTLRLPPGATKGEVKRAFRRLALTYHPDVSKESDSGVHFQRINVAYQMVMGNMREAE 107
D Y+TL++ P +++ EVK+AFR+LA YHPDV + S+ GV FQ IN AY +V+ ++
Sbjct: 55 DPYKTLKIRPDSSEYEVKKAFRQLAKKYHPDVCRGSNCGVQFQTINEAYDIVLKQIKNQM 114
Query: 108 ERLEYWRLKYGLDDEDLDKYRNHLNDEDDDEW 139
E E + + + DE L N +ND D D W
Sbjct: 115 EGTEEFE-PFDVYDEGL----NGMNDPDCDTW 141
>AT2G33735.1 | chr2:14268532-14269394 REVERSE LENGTH=120
Length = 119
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 47 EDHYRTLRLPPGATKGEVKRAFRRLALTYHPDVSKESDSGV-HFQRINVAYQMVMGNMRE 105
+DHY+ L L A+ E++ +F RLAL +HPD KE DS FQ IN AYQ++ +
Sbjct: 21 KDHYKVLELNCDASDDEIRSSFIRLALKWHPDKFKEEDSATSRFQEINEAYQVLSDPIAR 80
Query: 106 AEERLEYWRLKYGLDDEDLDKYR 128
E + R Y + E L++Y+
Sbjct: 81 QEYDKKRMRRIYEHNTELLNEYK 103
>AT5G59610.1 | chr5:24013165-24014954 FORWARD LENGTH=269
Length = 268
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 50 YRTLRLPPGATKGEVKRAFRRLALTYHPDVSKESDSGVHFQRINVAYQMVMGN 102
Y L + P AT ++KRA+R+LAL YHPDV+KE+++ F +I AY ++ +
Sbjct: 75 YEILGVSPSATPQDIKRAYRKLALKYHPDVNKEANAQEKFLKIKHAYTTLINS 127
>AT1G72070.1 | chr1:27118851-27119608 REVERSE LENGTH=127
Length = 126
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 44 GPVEDHYRTLRLPPGATKGEVKRAFRRLALTYHPDVSKESDSGVHFQRINVAYQMV 99
P HY L L P A++ EVKRAF+RLAL YHPDV K D F+ I AY+ +
Sbjct: 35 SPDLSHYTVLGLTPLASQTEVKRAFKRLALKYHPDVHKGQDKD--FKEIKSAYECL 88
>AT1G80030.1 | chr1:30105398-30108873 REVERSE LENGTH=501
Length = 500
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 48 DHYRTLRLPPGATKGEVKRAFRRLALTYHPDVSKESDSGVHFQRINVAYQMVMGNMREA 106
D+Y TL + A E+K A+RRLA YHPDV+KE + F+ I+ AY+++ + A
Sbjct: 75 DYYATLGVSKSANNKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDEQKRA 133
>AT5G18140.1 | chr5:5998235-5999699 FORWARD LENGTH=334
Length = 333
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 38/53 (71%)
Query: 47 EDHYRTLRLPPGATKGEVKRAFRRLALTYHPDVSKESDSGVHFQRINVAYQMV 99
++HY L + AT+G++KRA+R LA +HPDV+K+S +G F+ + +Y+++
Sbjct: 76 QNHYAVLGIARNATQGDIKRAYRLLARKFHPDVNKDSKAGELFKSVRCSYEVL 128
>AT2G22360.1 | chr2:9498162-9500459 FORWARD LENGTH=443
Length = 442
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 48 DHYRTLRLPPGATKGEVKRAFRRLALTYHPDVSKESDSGVHFQRINVAYQMVMGNMREA 106
D+Y L + ATK E+K A+R+LA YHPDV+K+ + F+ I+ AY+++ + +++
Sbjct: 86 DYYSVLGVSKNATKAEIKSAYRKLARNYHPDVNKDPGAEEKFKEISNAYEVLSDDEKKS 144
>AT4G39960.1 | chr4:18534194-18536320 FORWARD LENGTH=448
Length = 447
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 48 DHYRTLRLPPGATKGEVKRAFRRLALTYHPDVSKESDSGVHFQRINVAYQMVMGNMREAE 107
D Y L + ATK E+K A+R+LA +YHPDV+K++ + F+ I+ AY++ + + E
Sbjct: 85 DFYSVLGVSKNATKAEIKSAYRKLARSYHPDVNKDAGAEDKFKEISNAYEI----LSDDE 140
Query: 108 ERLEYWRLKYG 118
+R Y R YG
Sbjct: 141 KRSLYDR--YG 149
>AT1G28210.2 | chr1:9854598-9859977 FORWARD LENGTH=428
Length = 427
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 48 DHYRTLRLPPGATKGEVKRAFRRLALTYHPDVSKESDSGVH-FQRINVAYQMVMGNMREA 106
++Y L + P AT+ E+K++F LA +HPD ++ + S FQ I AY+ +GN +
Sbjct: 48 NYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKFQEIREAYE-TLGN---S 103
Query: 107 EERLEYWRLKYGLDDEDLDKYRNHLNDEDDDEWF 140
E R EY +L+Y D Y N ND D E F
Sbjct: 104 ERREEYDKLQYRNSD-----YVN--NDGGDSERF 130
>AT2G41000.2 | chr2:17111673-17112532 FORWARD LENGTH=212
Length = 211
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 48 DHYRTLRLPPGATKGEVKRAFRRLALTYHPDVSKES------DSGVHFQRINVAYQMVMG 101
DHY+ L + ATK EVK AFRRLA+ YHPD +S ++ V F+ ++ AY+++
Sbjct: 3 DHYQVLGVTRNATKKEVKDAFRRLAIKYHPDKHAQSPEHVRHNATVRFKLVSEAYEVLND 62
Query: 102 NMREAE 107
+++ A
Sbjct: 63 DLKRAS 68
>AT3G17830.1 | chr3:6101868-6104503 FORWARD LENGTH=518
Length = 517
Score = 49.7 bits (117), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 48 DHYRTLRLPPGATKGEVKRAFRRLALTYHPDVSKESDSGVHFQRINVAYQMVMGNMREAE 107
DHY TL + AT E+K ++R+LA YHPD++K + F++I+ AY++ + + E
Sbjct: 63 DHYSTLNVNRNATLQEIKSSYRKLARKYHPDMNKNPGAEDKFKQISAAYEV----LSDEE 118
Query: 108 ERLEYWRL 115
+R Y R
Sbjct: 119 KRSAYDRF 126
>AT1G79940.1 | chr1:30070023-30073237 FORWARD LENGTH=688
Length = 687
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 46 VEDHYRTLRLPPGATKGEVKRAFRRLALTYHPDVSKESDSGVHF-QRINVAYQMVMGNMR 104
V D + L L PG T E+K+A+RRL++ YHPD + + ++ +F + I+ AYQ + ++
Sbjct: 97 VFDPFSILGLEPGVTDSEIKKAYRRLSIQYHPDKNPDPEANKYFVEFISKAYQALTDSV- 155
Query: 105 EAEERLEYWRLKYGLDD 121
+ E E KYG D
Sbjct: 156 -SRENFE----KYGHPD 167
>AT3G62600.1 | chr3:23151038-23153346 REVERSE LENGTH=347
Length = 346
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 7/73 (9%)
Query: 47 EDHYRTLRLPPGATKGEVKRAFRRLALTYHPDVSKESDSGV-HFQRINVAYQMVMGNMRE 105
+ +Y L++P GA+ ++KRA+R+LAL YHPD ++ ++ F IN AY+++
Sbjct: 25 KSYYDVLQVPKGASDEQIKRAYRKLALKYHPDKNQGNEEATRKFAEINNAYEVL-----S 79
Query: 106 AEERLEYWRLKYG 118
EE+ E + KYG
Sbjct: 80 DEEKREIYN-KYG 91
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.139 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,800,030
Number of extensions: 104274
Number of successful extensions: 596
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 13
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)