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Os06g0645400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Aminoacyl-tRNA synthetase, class 1a, anticodon-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.021) R2 : 0.692
β1 : 1.03 (0.0771) R2dD : 0.124 R2D : 0.0958
β2 : 1.6 (0.0545) R2dC : 0.586 R2C : 0.565
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.21 (0.0449) R2dN8 : 0.0197 R2N8 : -0.00766
σ : 0.396
deviance : 71.4
__
_____
C
peak time of C : 16.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.44 0.371 10.6 1.04 1.53 0.669 0.496 1.04 0.179 17.3 39.45 72 -- --
64.09 0.373 10.6 1.02 1.52 0.586 0.544 -- 0.173 17.3 37.63 70 -- --
63.02 0.37 10.6 1.04 1.53 0.665 -- 1.1 0.181 17.3 39.45 70 -- --
64.92 0.375 10.6 1.05 1.53 0.576 -- -- 0.182 17.3 37.44 70 -- --
76.89 0.408 10.6 0.893 -- 1.66 -- 1.01 0.0375 -- 1.869 604 -- --
70.69 0.394 10.6 1.03 1.6 -- 0.523 -- 0.207 16.9 -- -- -- --
71.4 0.396 10.6 1.03 1.6 -- -- -- 0.21 16.9 -- -- -- --
75.88 0.406 10.6 0.912 -- 1.73 -- -- 0.12 -- 1.869 607 -- --
91.61 0.446 10.6 -- 1.47 0.529 -- -- 0.0673 17.4 30.03 92 -- --
206.9 0.672 10.6 0.968 -- -- -- -- 0.168 -- -- -- -- --
99.19 0.466 10.6 -- 1.58 -- -- -- 0.0954 16.9 -- -- -- --
94.58 0.453 10.6 -- -- 1.76 -- -- 0.034 -- 0.005105 629 -- --
231.59 0.71 10.6 -- -- -- -- -- 0.061 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.60 temperature 15.0 90 > th dose dependent rect. 8 7
3 56.12 temperature 15.0 10 > th dose dependent rect. 9 6
6 56.24 atmosphere 1005.0 90 > th dose dependent rect. 3 5
8 56.26 humidity 90.0 10 < th dose independent rect. 4 5
10 56.28 atmosphere 1005.0 270 > th dose dependent rect. 4 1
16 56.42 temperature 20.0 270 > th dose dependent rect. 9 1
21 56.75 temperature 20.0 270 > th dose dependent rect. 8 3
44 57.48 wind 5.0 270 < th dose independent rect. 4 1
73 58.24 wind 1.0 270 > th dose independent rect. 3 2
76 58.26 wind 5.0 270 < th dose independent rect. 3 3
81 58.37 wind 9.0 270 < th dose independent rect. 5 23
97 58.66 precipitation 0.1 270 < th dose independent rect. 4 1
98 58.66 precipitation 0.1 270 < th dose dependent rect. 4 1
100 58.68 radiation 1.0 270 < th dose dependent rect. 4 1
108 58.79 temperature 10.0 270 > th dose independent rect. 4 1
110 58.79 temperature 30.0 270 < th dose independent rect. 4 1
111 58.79 humidity 50.0 270 > th dose independent rect. 4 1
114 58.79 atmosphere 995.0 270 > th dose independent rect. 4 1
115 58.79 atmosphere 1010.0 270 < th dose independent rect. 4 1
117 58.79 radiation 20.0 270 < th dose independent rect. 4 1
120 58.79 temperature 10.0 270 > th dose independent rect. 5 23
122 58.81 radiation 30.0 270 < th dose dependent rect. 4 1
131 58.88 radiation 1.0 270 < th dose independent rect. 4 1
134 58.89 radiation 10.0 270 < th dose dependent rect. 3 11
147 58.96 temperature 10.0 90 > th dose dependent rect. 8 19
148 58.97 temperature 10.0 1440 > th dose independent rect. 5 5
151 58.97 atmosphere 995.0 1440 > th dose independent rect. 5 5
152 58.97 atmosphere 1015.0 1440 < th dose independent rect. 5 5
153 58.97 temperature 10.0 1440 > th dose independent rect. 10 19
164 59.03 wind 9.0 270 < th dose independent rect. 6 21
168 59.09 wind 9.0 10 < th dose independent rect. 9 19
171 59.11 radiation 10.0 270 < th dose dependent rect. 3 4
172 59.11 radiation 20.0 270 < th dose dependent rect. 3 6
178 59.15 temperature 25.0 10 > th dose independent rect. 9 6
179 59.15 temperature 10.0 90 > th dose dependent rect. 4 4
185 59.17 temperature 15.0 90 > th dose independent rect. 15 17
186 59.17 wind 9.0 90 < th dose independent rect. 8 20
192 59.19 precipitation 0.1 90 < th dose independent rect. 8 20
193 59.19 precipitation 0.1 270 < th dose independent rect. 6 21
197 59.19 precipitation 0.1 90 < th dose dependent rect. 8 20
198 59.19 precipitation 0.1 270 < th dose dependent rect. 6 21
199 59.20 radiation 10.0 270 < th dose independent rect. 3 4
203 59.22 temperature 10.0 10 > th dose dependent rect. 9 19
211 59.26 precipitation 0.1 270 < th dose independent rect. 3 3
213 59.26 precipitation 0.1 270 < th dose dependent rect. 3 3
227 59.31 temperature 10.0 10 > th dose dependent rect. 4 5
232 59.32 temperature 10.0 270 > th dose dependent rect. 4 1
239 59.36 radiation 1.0 270 > th dose dependent rect. 8 2
243 59.36 radiation 40.0 270 < th dose dependent rect. 2 14
245 59.37 precipitation 0.1 10 < th dose independent rect. 4 5
249 59.37 precipitation 0.1 10 < th dose dependent rect. 4 5
256 59.39 temperature 10.0 30 > th dose independent rect. 4 5
258 59.39 temperature 30.0 30 < th dose independent rect. 4 5
259 59.39 humidity 50.0 30 > th dose independent rect. 4 5
261 59.39 atmosphere 995.0 30 > th dose independent rect. 4 5
262 59.39 atmosphere 1015.0 30 < th dose independent rect. 4 5
263 59.39 temperature 10.0 30 > th dose independent rect. 9 19
267 59.42 wind 9.0 270 < th dose dependent rect. 4 1
290 59.46 temperature 10.0 270 > th dose independent rect. 3 3
292 59.46 temperature 30.0 270 < th dose independent rect. 3 3
293 59.46 humidity 50.0 270 > th dose independent rect. 3 3
296 59.46 atmosphere 995.0 270 > th dose independent rect. 3 3
297 59.46 atmosphere 1015.0 270 < th dose independent rect. 3 3
303 59.46 temperature 10.0 270 > th dose independent rect. 6 21
308 59.47 temperature 25.0 10 > th dose independent rect. 1 8
315 59.48 precipitation 0.1 270 < th dose independent rect. 5 23
318 59.48 precipitation 0.1 270 < th dose dependent rect. 5 23
329 59.50 radiation 30.0 90 < th dose independent rect. 3 6
356 59.61 wind 9.0 1440 < th dose independent rect. 5 4
360 59.61 humidity 50.0 1440 > th dose independent rect. 5 4
376 59.65 atmosphere 1005.0 270 > th dose independent rect. 4 1
380 59.66 temperature 15.0 10 > th dose independent rect. 15 18
384 59.67 atmosphere 1015.0 90 < th dose independent rect. 15 17
397 59.72 humidity 90.0 90 < th dose independent rect. 8 7
429 59.80 temperature 15.0 90 > th dose independent rect. 8 7
435 59.84 humidity 90.0 10 < th dose independent rect. 9 6
459 59.91 humidity 50.0 270 > th dose dependent rect. 4 1
472 59.93 atmosphere 995.0 30 > th dose independent rect. 9 19
485 59.96 atmosphere 1015.0 10 < th dose independent rect. 15 18
491 59.97 humidity 90.0 10 < th dose dependent rect. 9 6
509 59.99 temperature 25.0 270 > th dose independent rect. 8 3
527 60.02 radiation 40.0 270 < th dose independent rect. 11 20
541 60.06 humidity 90.0 270 < th dose dependent rect. 9 1
542 60.07 radiation 10.0 270 > th dose independent rect. 8 2
546 60.08 wind 9.0 270 < th dose dependent rect. 3 3
566 60.13 radiation 10.0 10 > th dose independent rect. 9 6
567 60.13 radiation 1.0 270 < th dose independent rect. 3 9
568 60.13 radiation 40.0 90 < th dose independent rect. 13 19
571 60.13 wind 9.0 10 < th dose dependent rect. 4 5
594 60.19 precipitation 0.1 90 < th dose independent rect. 8 7
596 60.19 precipitation 0.1 90 < th dose dependent rect. 8 7
611 60.21 atmosphere 1005.0 90 > th dose independent rect. 4 4
620 60.22 radiation 10.0 90 > th dose independent rect. 8 7
650 60.27 wind 9.0 90 < th dose independent rect. 8 7
657 60.28 wind 1.0 90 > th dose independent rect. 8 7
664 60.30 temperature 25.0 270 > th dose independent rect. 9 1
696 60.38 atmosphere 1015.0 90 < th dose independent rect. 8 7
704 60.40 humidity 70.0 90 > th dose independent rect. 3 8
707 60.40 radiation 1.0 90 > th dose dependent rect. 8 7
718 60.44 radiation 10.0 270 > th dose independent sin 5 NA
727 60.45 atmosphere 995.0 90 > th dose independent rect. 8 7
738 60.47 radiation 40.0 270 > th dose independent rect. 9 1
748 60.50 radiation 10.0 270 > th dose independent rect. 16 21
764 60.51 radiation 40.0 90 < th dose independent rect. 15 17
802 60.58 humidity 80.0 270 < th dose independent rect. 8 2
816 60.60 wind 9.0 90 < th dose independent rect. 15 17
818 60.60 radiation 20.0 270 < th dose dependent sin 5 NA
871 60.68 atmosphere 995.0 90 > th dose independent rect. 15 17
892 60.72 wind 9.0 10 < th dose independent rect. 9 6
902 60.74 humidity 50.0 30 > th dose independent rect. 9 19
941 60.80 radiation 40.0 270 < th dose independent rect. 2 14
950 60.81 temperature 10.0 10 > th dose independent rect. 9 6
952 60.81 atmosphere 995.0 10 > th dose independent rect. 9 6
953 60.81 atmosphere 1015.0 10 < th dose independent rect. 9 6
955 60.81 precipitation 0.1 10 < th dose independent rect. 9 6
958 60.81 radiation 40.0 90 < th dose independent rect. 4 18
961 60.81 precipitation 0.1 10 < th dose dependent rect. 9 6
962 60.82 radiation 1.0 270 > th dose dependent sin 7 NA
983 60.85 wind 1.0 90 > th dose independent rect. 8 19