BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0645400 Os06g0645400|AK101482
         (387 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10320.1  | chr4:6397526-6404509 REVERSE LENGTH=1191           428   e-120

>AT4G10320.1 | chr4:6397526-6404509 REVERSE LENGTH=1191
          Length = 1190

 Score =  428 bits (1101), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/399 (53%), Positives = 287/399 (71%), Gaps = 12/399 (3%)

Query: 1    MQALVTTCVAMAPFTPFFTETLYQNLRKVSTKPEDSIHFCSFPSTTGERDERVEQSVNRM 60
               L+T+C  MAPFTPFFTETLYQNLRK     E+S+H+CS P   G   ER+E SV RM
Sbjct: 791  FNVLLTSCKVMAPFTPFFTETLYQNLRKACKGSEESVHYCSIPPREGMEGERIELSVTRM 850

Query: 61   MTIIDLARNIRERHNKALKTPLKEMVIVHPDNEFLEDITGKLKEYVMEEMNVKTVTPCND 120
            M IIDLARNIRER+   LKTPLKEM++VHPD +FL DITG L+EYV+EE+NV+++ PCND
Sbjct: 851  MKIIDLARNIRERNKLPLKTPLKEMIVVHPDADFLNDITGVLREYVLEELNVRSLVPCND 910

Query: 121  PMLYASLRAEPNFSVLGKRLGKDMGKVSNEVKKMTQEQILAFEQSGEISFFGHCLKLDDI 180
             + YASL+AEP+FSVLGKRLGK MG V+ EVK+M+Q+ ILAFE++GE++   H LK  DI
Sbjct: 911  TLKYASLKAEPDFSVLGKRLGKSMGLVAKEVKEMSQKDILAFEEAGEVTIANHLLKETDI 970

Query: 181  KVIRQFKRPANVAENEIDAAGDGDVLVVLDLRADQSLFEAGVAREVVNRIQKLRKTAQLE 240
            K++R FKRP ++ ENEID+AGDGDVLV+LDLRAD SL EAG ARE+VNRIQKLRK + LE
Sbjct: 971  KIVRVFKRPDDLKENEIDSAGDGDVLVILDLRADDSLVEAGFAREIVNRIQKLRKKSGLE 1030

Query: 241  PTDLVDVYYKPMDDGKNTLVEIVQSQDQYIRDALGNPLIPKMAAPPDAVMICEES----- 295
            PTD V+VY++ +D+ ++   +++ SQ+Q I+D++G+ L+     P  AV+I +E+     
Sbjct: 1031 PTDFVEVYFQSLDEDESVSKQVLVSQEQNIKDSIGSTLLLSSLMPSHAVIIADETFTPKE 1090

Query: 296  ------HNVQDMSFVIYIARVSPVVTDD-LLVHAAGNREHFDALKVYLLSRSISRLKNEF 348
                    V  +S+ I +AR +    ++ +L   +G+ +    L+ YLLSR  S LK+EF
Sbjct: 1091 TSDESVKKVPKLSYKISLARPALKFNEEAVLALYSGDVKSATGLQTYLLSRDHSNLKSEF 1150

Query: 349  QAGNGKITVDFIEGFPPIDLQLGKHVFLSTGDFYLATRS 387
            QAG+GKITV  IE  P   + LG+H+ LS GD  L+ R+
Sbjct: 1151 QAGDGKITVSCIENVPVATVVLGEHLHLSVGDDLLSKRN 1189



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,186,043
Number of extensions: 338142
Number of successful extensions: 961
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 961
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 287
Effective length of database: 8,364,969
Effective search space: 2400746103
Effective search space used: 2400746103
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)