BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0645400 Os06g0645400|AK101482
(387 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0645400 Aminoacyl-tRNA synthetase, class 1a, anticodon... 801 0.0
Os02g0183700 Zinc finger, CCHC-type domain containing protein 457 e-129
AK107300 171 9e-43
AK111232 157 1e-38
>Os06g0645400 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding domain
containing protein
Length = 387
Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/387 (100%), Positives = 387/387 (100%)
Query: 1 MQALVTTCVAMAPFTPFFTETLYQNLRKVSTKPEDSIHFCSFPSTTGERDERVEQSVNRM 60
MQALVTTCVAMAPFTPFFTETLYQNLRKVSTKPEDSIHFCSFPSTTGERDERVEQSVNRM
Sbjct: 1 MQALVTTCVAMAPFTPFFTETLYQNLRKVSTKPEDSIHFCSFPSTTGERDERVEQSVNRM 60
Query: 61 MTIIDLARNIRERHNKALKTPLKEMVIVHPDNEFLEDITGKLKEYVMEEMNVKTVTPCND 120
MTIIDLARNIRERHNKALKTPLKEMVIVHPDNEFLEDITGKLKEYVMEEMNVKTVTPCND
Sbjct: 61 MTIIDLARNIRERHNKALKTPLKEMVIVHPDNEFLEDITGKLKEYVMEEMNVKTVTPCND 120
Query: 121 PMLYASLRAEPNFSVLGKRLGKDMGKVSNEVKKMTQEQILAFEQSGEISFFGHCLKLDDI 180
PMLYASLRAEPNFSVLGKRLGKDMGKVSNEVKKMTQEQILAFEQSGEISFFGHCLKLDDI
Sbjct: 121 PMLYASLRAEPNFSVLGKRLGKDMGKVSNEVKKMTQEQILAFEQSGEISFFGHCLKLDDI 180
Query: 181 KVIRQFKRPANVAENEIDAAGDGDVLVVLDLRADQSLFEAGVAREVVNRIQKLRKTAQLE 240
KVIRQFKRPANVAENEIDAAGDGDVLVVLDLRADQSLFEAGVAREVVNRIQKLRKTAQLE
Sbjct: 181 KVIRQFKRPANVAENEIDAAGDGDVLVVLDLRADQSLFEAGVAREVVNRIQKLRKTAQLE 240
Query: 241 PTDLVDVYYKPMDDGKNTLVEIVQSQDQYIRDALGNPLIPKMAAPPDAVMICEESHNVQD 300
PTDLVDVYYKPMDDGKNTLVEIVQSQDQYIRDALGNPLIPKMAAPPDAVMICEESHNVQD
Sbjct: 241 PTDLVDVYYKPMDDGKNTLVEIVQSQDQYIRDALGNPLIPKMAAPPDAVMICEESHNVQD 300
Query: 301 MSFVIYIARVSPVVTDDLLVHAAGNREHFDALKVYLLSRSISRLKNEFQAGNGKITVDFI 360
MSFVIYIARVSPVVTDDLLVHAAGNREHFDALKVYLLSRSISRLKNEFQAGNGKITVDFI
Sbjct: 301 MSFVIYIARVSPVVTDDLLVHAAGNREHFDALKVYLLSRSISRLKNEFQAGNGKITVDFI 360
Query: 361 EGFPPIDLQLGKHVFLSTGDFYLATRS 387
EGFPPIDLQLGKHVFLSTGDFYLATRS
Sbjct: 361 EGFPPIDLQLGKHVFLSTGDFYLATRS 387
>Os02g0183700 Zinc finger, CCHC-type domain containing protein
Length = 1080
Score = 457 bits (1177), Expect = e-129, Method: Compositional matrix adjust.
Identities = 226/312 (72%), Positives = 258/312 (82%), Gaps = 16/312 (5%)
Query: 2 QALVTTCVAMAPFTPFFTETLYQNLRKVSTKPEDSIHFCSFPSTTGERDERVEQSVNRMM 61
ALVTTCV MAPFTPFFTE LYQNLRKVS+K E SIHFC+FPS+TG+ DERVE SVNRMM
Sbjct: 753 HALVTTCVVMAPFTPFFTEVLYQNLRKVSSKSEKSIHFCNFPSSTGQIDERVEHSVNRMM 812
Query: 62 TIIDLARNIRERHNKALKTPLK----------------EMVIVHPDNEFLEDITGKLKEY 105
TI+DLARNIRERHN+ LKTPL+ EMV+VHPDN+FLEDITGKLKEY
Sbjct: 813 TIVDLARNIRERHNRPLKTPLRHAHYTTILFTQFLVLWEMVVVHPDNDFLEDITGKLKEY 872
Query: 106 VMEEMNVKTVTPCNDPMLYASLRAEPNFSVLGKRLGKDMGKVSNEVKKMTQEQILAFEQS 165
V EEMNVK VT C+DP++Y+SLRAEPNFSVLGKRLGKDMGK+SNEVKKMTQ+QIL FE+S
Sbjct: 873 VKEEMNVKMVTACSDPLVYSSLRAEPNFSVLGKRLGKDMGKISNEVKKMTQDQILTFEES 932
Query: 166 GEISFFGHCLKLDDIKVIRQFKRPANVAENEIDAAGDGDVLVVLDLRADQSLFEAGVARE 225
GEI F H L L+DIKV R+FKRPANV+E EIDAAGDGDVLV+LDL+ DQSLFEAGV RE
Sbjct: 933 GEIFFGSHLLTLEDIKVFREFKRPANVSEKEIDAAGDGDVLVILDLQVDQSLFEAGVVRE 992
Query: 226 VVNRIQKLRKTAQLEPTDLVDVYYKPMDDGKNTLVEIVQSQDQYIRDALGNPLIPKMAAP 285
VVN+IQKL+KTAQL TD VDVYY D ++L +I+QSQDQYIRDALG+PL K A
Sbjct: 993 VVNKIQKLKKTAQLRLTDPVDVYYSSQDSSDSSLEKILQSQDQYIRDALGSPLTSKAQAQ 1052
Query: 286 PDAVMICEESHN 297
P+ +ICEE++N
Sbjct: 1053 PNVEVICEEAYN 1064
>AK107300
Length = 819
Score = 171 bits (433), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 109/317 (34%), Positives = 168/317 (52%), Gaps = 12/317 (3%)
Query: 1 MQALVTTCVAMAPFTPFFTETLYQNLRKVSTKP-----ED--SIHFCSFPSTTGER-DER 52
+ L+T C ++ FTPF TE LYQ LRK P ED S+HF SFP D
Sbjct: 504 FETLLTLCRTLSSFTPFLTENLYQGLRKYMPAPAADDKEDYRSVHFLSFPEVNESYFDPV 563
Query: 53 VEQSVNRMMTIIDLARNIRERHNKALKTPLKEMVIVHPDNEFLEDITGKLKEYVMEEMNV 112
+++ + +++L R IR N ++ PLKE+V+ H D E+L D L +Y+ EE+NV
Sbjct: 564 IQRQFKALQAVVELGRVIRVNSNLPIRVPLKELVVFHTDAEYLADAES-LADYIKEELNV 622
Query: 113 K-TVTPCNDPMLYASLRAEPNFSVLGKRLGKDMGKVSNEVKKMTQEQILAFEQSGEISFF 171
+ V ++ + ++ VLG++L KD+GKV ++ ++ ++ + Q+G+++
Sbjct: 623 RDLVLSSDEAKCGVRFKLFADWPVLGRKLRKDVGKVRKGLEGVSSDEAKRYMQTGKLNVA 682
Query: 172 GHCLKLDDIKVIRQFKRPANVAENEIDAAGDGDVLVVLDLRADQSLFEAGVAREVVNRIQ 231
G L D+KV R + E ++ DG+V+V+LD++ L G AREVVNRIQ
Sbjct: 683 GVDLVEGDLKVSRYVE--TKEIEGAFESNTDGNVVVLLDVQPRPELQAEGTAREVVNRIQ 740
Query: 232 KLRKTAQLEPTDLVDVYYKPMDDGKNTLVEIVQSQDQYIRDALGNPLIPKMAAPPDAVMI 291
+LRK A L TD VD +Y L E ++SQ AL +P+ PDA +I
Sbjct: 741 RLRKKAGLVATDEVDAFYSFEQGLGQALAECIESQSDAFMKALRRKPLPESHRKPDAKVI 800
Query: 292 CEESHNVQDMSFVIYIA 308
+E V D FV+ +A
Sbjct: 801 LQEEQEVGDDKFVLTLA 817
>AK111232
Length = 1079
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 153/268 (57%), Gaps = 10/268 (3%)
Query: 1 MQALVTTCVAMAPFTPFFTETLYQNL-----RKVSTKPEDSIHFCSFPSTTGER-DERVE 54
+ L T C +APFTPF TE +Y L + + + SIHF FP E DE VE
Sbjct: 757 FEVLYTLCRGLAPFTPFITENIYLRLLPHIPKSLHAEDNRSIHFLPFPEVREELFDEVVE 816
Query: 55 QSVNRMMTIIDLARNIRERHNKALKTPLKEMVIVHPDNEFLEDITGKLKEYVMEEMNVKT 114
+ V RM +I+L R R+R NK LK PLK +V++HPD ++L+D+ L+ Y++EE+N++
Sbjct: 817 RQVKRMQAVIELGRVCRDRANKGLKIPLKTLVVIHPDQQYLDDVKS-LENYIVEELNIRD 875
Query: 115 VTPCNDPMLY-ASLRAEPNFSVLGKRLGKDMGKVSNEVKKMTQEQILAFEQSGEISFFGH 173
+ D Y A +FSVLGK+L KD KV + +T ++I F ++GE+ G
Sbjct: 876 LVLSKDEEKYNVQYSATADFSVLGKKLKKDAVKVKKALPNLTSQEIKDFLKNGELLVDGI 935
Query: 174 CLKLDDIKVIRQFKRPANVAENEIDAAGDGDVLVVLDLRADQSLFEAGVAREVVNRIQKL 233
++ +D+ V R + + E + D DVL++LD+ + L + G+AREV+ R+Q L
Sbjct: 936 KVEAEDLMVKRGLAKDDANKDQEFNT--DNDVLIILDVASYPELEQEGLAREVIRRVQDL 993
Query: 234 RKTAQLEPTDLVDVYYKPMDDGKNTLVE 261
RK A L PTD V + Y+ + D N +E
Sbjct: 994 RKKAGLVPTDDVGMEYRVLSDPDNLGLE 1021
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,387,904
Number of extensions: 496591
Number of successful extensions: 1217
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 4
Length of query: 387
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 284
Effective length of database: 11,657,759
Effective search space: 3310803556
Effective search space used: 3310803556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)