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Os06g0643000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phox-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.06 (0.0182) R2 : 0.42
β1 : 0.916 (0.0664) R2dD : 0.251 R2D : 0.204
β2 : 0.527 (0.0453) R2dC : 0.173 R2C : 0.165
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.176 (0.0387) R2dN8 : 0.0353 R2N8 : -0.0041
σ : 0.341
deviance : 53.05
__
_____
C
peak time of C : 8.76
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.18 0.319 7.07 1.03 0.719 1.48 0.627 -0.515 0.24 16.6 2.83 799 -- --
46.12 0.316 7.07 1.03 0.717 1.53 0.937 -- 0.242 16.9 2.577 825 -- --
46.5 0.318 7.06 1.07 0.732 1.52 -- -1.24 0.255 16.8 2.862 804 -- --
48.33 0.324 7.07 1.03 0.761 1.59 -- -- 0.247 17.1 2.437 826 -- --
50.13 0.33 7.06 1.03 -- 0.852 -- -0.376 0.239 -- 3.285 1020 -- --
53.02 0.341 7.06 0.919 0.527 -- -0.101 -- 0.176 8.7 -- -- -- --
53.05 0.341 7.06 0.916 0.527 -- -- -- 0.176 8.76 -- -- -- --
50.63 0.331 7.06 0.996 -- 0.842 -- -- 0.235 -- 2.781 1026 -- --
73.51 0.399 7.08 -- 0.281 0.956 -- -- 0.127 16.2 9.992 872 -- --
68.79 0.388 7.07 0.917 -- -- -- -- 0.18 -- -- -- -- --
75.18 0.406 7.08 -- 0.529 -- -- -- 0.074 8.63 -- -- -- --
74.63 0.402 7.08 -- -- 0.781 -- -- 0.125 -- 10 976 -- --
90.98 0.445 7.09 -- -- -- -- -- 0.0785 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.61 radiation 1.0 720 > th dose independent rect. 16 3
12 42.81 precipitation 0.1 720 < th dose independent rect. 7 21
13 42.81 precipitation 0.1 720 < th dose dependent rect. 7 21
15 43.28 radiation 1.0 720 < th dose independent rect. 14 10
25 43.60 precipitation 0.1 720 < th dose independent rect. 1 18
26 43.60 precipitation 0.1 720 < th dose dependent rect. 1 18
27 43.61 precipitation 0.1 720 < th dose independent rect. 15 13
29 43.61 precipitation 0.1 720 < th dose dependent rect. 15 13
30 43.67 radiation 1.0 720 < th dose dependent rect. 17 8
31 43.71 radiation 1.0 720 < th dose dependent rect. 14 10
33 43.77 radiation 1.0 720 > th dose independent rect. 7 12
51 43.92 radiation 1.0 720 < th dose dependent rect. 11 13
64 44.08 humidity 80.0 720 < th dose independent rect. 16 3
103 44.33 temperature 10.0 720 > th dose dependent rect. 4 3
105 44.39 precipitation 0.1 720 < th dose independent rect. 13 15
106 44.39 precipitation 0.1 720 < th dose dependent rect. 13 15
109 44.44 humidity 50.0 720 > th dose dependent rect. 19 4
125 44.60 precipitation 0.1 720 < th dose independent rect. 7 14
126 44.60 precipitation 0.1 720 < th dose dependent rect. 7 14
128 44.63 precipitation 0.1 720 < th dose independent rect. 16 3
129 44.63 precipitation 0.1 720 < th dose dependent rect. 16 3
171 45.05 radiation 1.0 720 < th dose independent sin 17 NA
173 45.06 radiation 1.0 720 < th dose independent rect. 4 20
200 45.20 precipitation 0.1 720 < th dose independent rect. 9 10
211 45.20 precipitation 0.1 720 < th dose dependent rect. 9 10
219 45.29 wind 9.0 4320 < th dose independent rect. 6 3
225 45.32 radiation 1.0 720 < th dose dependent sin 17 NA
228 45.36 wind 1.0 270 > th dose independent rect. 4 2
236 45.46 humidity 70.0 720 > th dose independent rect. 19 12
237 45.47 humidity 70.0 720 > th dose independent rect. 19 5
239 45.49 wind 7.0 720 < th dose independent rect. 16 3
244 45.52 radiation 1.0 720 < th dose dependent rect. 4 20
246 45.53 precipitation 0.1 90 < th dose independent rect. 8 21
247 45.53 precipitation 0.1 90 < th dose dependent rect. 8 21
250 45.56 radiation 1.0 720 > th dose independent sin 16 NA
255 45.59 wind 1.0 90 > th dose independent rect. 4 4
260 45.61 temperature 30.0 90 < th dose independent rect. 8 21
261 45.61 temperature 10.0 720 > th dose dependent rect. 16 3
290 45.69 wind 1.0 720 > th dose independent rect. 16 3
298 45.72 precipitation 0.1 720 < th dose independent rect. 16 19
299 45.72 precipitation 0.1 720 < th dose dependent rect. 16 19
301 45.73 humidity 90.0 720 < th dose dependent rect. 16 3
305 45.74 wind 5.0 90 < th dose independent rect. 17 12
320 45.79 radiation 30.0 90 < th dose dependent rect. 5 4
324 45.82 wind 1.0 90 > th dose independent rect. 9 19
354 45.88 precipitation 0.1 720 < th dose independent rect. 16 17
357 45.88 precipitation 0.1 720 < th dose dependent rect. 16 17
368 45.92 precipitation 0.1 30 < th dose independent rect. 18 11
372 45.92 precipitation 0.1 30 < th dose dependent rect. 18 11
374 45.94 humidity 50.0 1440 > th dose independent rect. 5 5
378 45.95 temperature 10.0 1440 > th dose independent rect. 6 3
381 45.95 humidity 50.0 1440 > th dose independent rect. 6 3
383 45.95 atmosphere 995.0 1440 > th dose independent rect. 6 3
384 45.95 atmosphere 1015.0 1440 < th dose independent rect. 6 3
385 45.95 temperature 10.0 1440 > th dose independent rect. 9 21
389 45.95 wind 9.0 30 < th dose dependent rect. 18 11
393 45.98 temperature 15.0 30 > th dose independent rect. 8 21
396 45.99 temperature 15.0 720 > th dose independent rect. 16 3
399 46.00 humidity 80.0 270 > th dose independent rect. 4 2
408 46.01 radiation 20.0 90 < th dose independent rect. 5 3
409 46.01 wind 1.0 270 > th dose independent rect. 7 21
410 46.01 humidity 50.0 270 > th dose dependent rect. 19 12
427 46.04 atmosphere 995.0 90 > th dose independent rect. 8 21
429 46.04 humidity 50.0 90 > th dose dependent rect. 5 3
434 46.05 temperature 15.0 30 > th dose independent rect. 18 11
435 46.05 humidity 70.0 720 > th dose independent rect. 14 17
437 46.06 wind 9.0 270 < th dose independent rect. 4 2
438 46.06 temperature 10.0 270 > th dose independent rect. 4 2
440 46.06 temperature 30.0 270 < th dose independent rect. 4 2
441 46.06 humidity 50.0 270 > th dose independent rect. 4 2
444 46.06 atmosphere 995.0 270 > th dose independent rect. 4 2
445 46.06 atmosphere 1015.0 270 < th dose independent rect. 4 2
449 46.06 temperature 10.0 270 > th dose independent rect. 6 22
451 46.06 radiation 40.0 1440 < th dose dependent rect. 19 10
460 46.07 humidity 50.0 270 > th dose dependent rect. 17 14
488 46.14 precipitation 0.1 270 < th dose independent rect. 4 2
491 46.14 precipitation 0.1 270 < th dose dependent rect. 4 2
523 46.19 wind 9.0 720 < th dose dependent rect. 4 3
535 46.21 radiation 1.0 720 > th dose independent sin 21 NA
546 46.21 wind 9.0 270 < th dose independent rect. 6 22
558 46.24 wind 9.0 90 < th dose dependent rect. 5 3
567 46.26 humidity 50.0 720 > th dose independent rect. 19 21
582 46.27 precipitation 0.1 720 < th dose independent rect. 11 17
587 46.27 precipitation 0.1 720 < th dose dependent rect. 11 17
595 46.31 atmosphere 1015.0 720 < th dose independent rect. 16 3
596 46.31 radiation 40.0 720 < th dose independent rect. 16 3
598 46.31 temperature 10.0 720 > th dose independent rect. 19 21
603 46.32 humidity 80.0 270 > th dose independent rect. 3 4
609 46.33 wind 9.0 90 < th dose independent rect. 8 21
619 46.35 radiation 1.0 720 > th dose independent rect. 16 21
652 46.38 humidity 50.0 720 > th dose dependent rect. 14 17
668 46.41 temperature 30.0 720 < th dose independent rect. 18 6
679 46.42 precipitation 0.1 720 < th dose independent rect. 22 23
684 46.42 precipitation 0.1 720 < th dose dependent rect. 22 23
694 46.44 atmosphere 1015.0 90 < th dose dependent rect. 5 2
759 46.48 wind 9.0 270 < th dose dependent rect. 5 1
793 46.53 radiation 1.0 720 > th dose independent rect. 7 6
797 46.53 atmosphere 995.0 270 > th dose dependent rect. 4 2
837 46.56 humidity 70.0 720 > th dose independent rect. 14 10
838 46.56 radiation 10.0 1440 < th dose independent rect. 19 10
846 46.57 humidity 80.0 720 < th dose independent rect. 9 10
875 46.59 radiation 10.0 30 < th dose dependent rect. 18 11
889 46.61 humidity 50.0 30 > th dose independent rect. 18 11
890 46.61 atmosphere 995.0 30 > th dose independent rect. 18 11
891 46.61 radiation 10.0 30 < th dose independent rect. 18 11
895 46.61 temperature 10.0 30 > th dose independent rect. 5 13
897 46.61 atmosphere 1015.0 30 < th dose independent rect. 5 13
950 46.68 wind 9.0 30 < th dose independent rect. 5 13
951 46.68 temperature 30.0 720 < th dose independent rect. 18 13
955 46.68 temperature 10.0 30 > th dose dependent rect. 5 13
984 46.72 humidity 50.0 90 > th dose independent rect. 8 21
994 46.73 humidity 90.0 720 > th dose dependent rect. 19 2