BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0643000 Os06g0643000|AK067701
         (710 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0643000  Phox-like domain containing protein                1328   0.0  

>Os06g0643000 Phox-like domain containing protein
          Length = 710

 Score = 1328 bits (3438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 663/710 (93%), Positives = 663/710 (93%)

Query: 1   MATPSSFSSARKKAPSPPKHRHDGTSGLPFGMDWSPPPKRWEGRNTIWPHNPQTGWSYCV 60
           MATPSSFSSARKKAPSPPKHRHDGTSGLPFGMDWSPPPKRWEGRNTIWPHNPQTGWSYCV
Sbjct: 1   MATPSSFSSARKKAPSPPKHRHDGTSGLPFGMDWSPPPKRWEGRNTIWPHNPQTGWSYCV 60

Query: 61  MIPSWIAQTPEASATADNFLKSIVFYRIHVGIQSPEGISSSHGVLRRFSDFLKLSSDLKQ 120
           MIPSWIAQTPEASATADNFLKSIVFYRIHVGIQSPEGISSSHGVLRRFSDFLKLSSDLKQ
Sbjct: 61  MIPSWIAQTPEASATADNFLKSIVFYRIHVGIQSPEGISSSHGVLRRFSDFLKLSSDLKQ 120

Query: 121 EFPRKGIPPAPPKHAFSRINSSRVLLEERRNALEEWMQKLLSDIELSRSAPVAAFLELEA 180
           EFPRKGIPPAPPKHAFSRINSSRVLLEERRNALEEWMQKLLSDIELSRSAPVAAFLELEA
Sbjct: 121 EFPRKGIPPAPPKHAFSRINSSRVLLEERRNALEEWMQKLLSDIELSRSAPVAAFLELEA 180

Query: 181 AARSYYQDWNQRPSEVGXXXXXXXXXXPRPDEHGSGVLSESSQMNSAFAHGNGPTGATGN 240
           AARSYYQDWNQRPSEVG          PRPDEHGSGVLSESSQMNSAFAHGNGPTGATGN
Sbjct: 181 AARSYYQDWNQRPSEVGSSAKSSADSSPRPDEHGSGVLSESSQMNSAFAHGNGPTGATGN 240

Query: 241 GMLGESILDQPNERASSMSNHRKKNHVFLEHGVRNGSIDTYKGVVSEEDHDSNPGHARKD 300
           GMLGESILDQPNERASSMSNHRKKNHVFLEHGVRNGSIDTYKGVVSEEDHDSNPGHARKD
Sbjct: 241 GMLGESILDQPNERASSMSNHRKKNHVFLEHGVRNGSIDTYKGVVSEEDHDSNPGHARKD 300

Query: 301 SAESIGSDLSSLRGSELSVPGVSSSLWDGPVDLPSGIDGHSQTEQFTGLDMQLLYDMDAQ 360
           SAESIGSDLSSLRGSELSVPGVSSSLWDGPVDLPSGIDGHSQTEQFTGLDMQLLYDMDAQ
Sbjct: 301 SAESIGSDLSSLRGSELSVPGVSSSLWDGPVDLPSGIDGHSQTEQFTGLDMQLLYDMDAQ 360

Query: 361 IILPADQRPKLTRLLISMDRRQVTAKTDMEDLIARLNQEVAVKEYLATKVKDLEVELEAT 420
           IILPADQRPKLTRLLISMDRRQVTAKTDMEDLIARLNQEVAVKEYLATKVKDLEVELEAT
Sbjct: 361 IILPADQRPKLTRLLISMDRRQVTAKTDMEDLIARLNQEVAVKEYLATKVKDLEVELEAT 420

Query: 421 KKKDKEILHQAVLTEREKITQLQWDKDELYRKYSEMESNLKIEQNEKTRVQSEKTTASGX 480
           KKKDKEILHQAVLTEREKITQLQWDKDELYRKYSEMESNLKIEQNEKTRVQSEKTTASG 
Sbjct: 421 KKKDKEILHQAVLTEREKITQLQWDKDELYRKYSEMESNLKIEQNEKTRVQSEKTTASGE 480

Query: 481 XXXXXXXXXXXXXXXXSLQQHIGEFEAKSKADIKVLVKEVKSLRNSQKEMKKVLNQYHEE 540
                           SLQQHIGEFEAKSKADIKVLVKEVKSLRNSQKEMKKVLNQYHEE
Sbjct: 481 KEMLLEELETKRKEVESLQQHIGEFEAKSKADIKVLVKEVKSLRNSQKEMKKVLNQYHEE 540

Query: 541 KTELERIVNREKQRSTRARFSREKILHECRLLRERLQECTAKFVADEQDTMTIDLSSLPD 600
           KTELERIVNREKQRSTRARFSREKILHECRLLRERLQECTAKFVADEQDTMTIDLSSLPD
Sbjct: 541 KTELERIVNREKQRSTRARFSREKILHECRLLRERLQECTAKFVADEQDTMTIDLSSLPD 600

Query: 601 ALDLVTTSDNRIRLLVAEAQLLXXXXXXXXXXXXXXXXXXXXVTMSSEDAYVTDEETTKM 660
           ALDLVTTSDNRIRLLVAEAQLL                    VTMSSEDAYVTDEETTKM
Sbjct: 601 ALDLVTTSDNRIRLLVAEAQLLSRDDEQGSSDDGDNSDGKSSVTMSSEDAYVTDEETTKM 660

Query: 661 LSDLLIDNAQLRLRLNSLIRNAVNTAVKTEKEGSDGTVPKKTVLNWLLDR 710
           LSDLLIDNAQLRLRLNSLIRNAVNTAVKTEKEGSDGTVPKKTVLNWLLDR
Sbjct: 661 LSDLLIDNAQLRLRLNSLIRNAVNTAVKTEKEGSDGTVPKKTVLNWLLDR 710



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.128    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,321,151
Number of extensions: 946976
Number of successful extensions: 3059
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3056
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 602
Effective length of database: 11,396,689
Effective search space: 6860806778
Effective search space used: 6860806778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)