Os06g0635300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0635300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.55 | 0.218 | 3.02 | 0.622 | 0.0366 | 0.357 | 0.154 | -2.81 | -0.0678 | 10.9 | 30 | 1468 | -- | -- |
| 22.52 | 0.223 | 3.09 | 0.0379 | 0.0476 | 0.0314 | 0.145 | -- | -0.108 | 10.9 | 30 | 1468 | -- | -- |
| 21.62 | 0.217 | 3.02 | 0.613 | 0.0379 | 0.369 | -- | -2.89 | -0.0698 | 10.3 | 29.98 | 1523 | -- | -- |
| 22.45 | 0.221 | 3.08 | 0.0473 | 0.0336 | 0.0476 | -- | -- | -0.0892 | 10.4 | 30 | 8606 | -- | -- |
| 21.71 | 0.217 | 3.02 | 0.626 | -- | 0.377 | -- | -2.96 | -0.0698 | -- | 29.93 | 1523 | -- | -- |
| 22.55 | 0.223 | 3.09 | 0.0343 | 0.0445 | -- | 0.142 | -- | -0.107 | 10.4 | -- | -- | -- | -- |
| 22.63 | 0.223 | 3.09 | 0.0398 | 0.0446 | -- | -- | -- | -0.107 | 9.85 | -- | -- | -- | -- |
| 22.52 | 0.221 | 3.09 | 0.0537 | -- | 0.0642 | -- | -- | -0.0836 | -- | 30.1 | 8537 | -- | -- |
| 22.5 | 0.221 | 3.09 | -- | 0.0413 | 0.0544 | -- | -- | -0.0999 | 9.45 | 30.02 | 8537 | -- | -- |
| 22.75 | 0.223 | 3.09 | 0.0393 | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
| 22.67 | 0.223 | 3.09 | -- | 0.0445 | -- | -- | -- | -0.111 | 9.78 | -- | -- | -- | -- |
| 22.6 | 0.221 | 3.09 | -- | -- | 0.0616 | -- | -- | -0.0966 | -- | 30.18 | 8516 | -- | -- |
| 22.79 | 0.223 | 3.09 | -- | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.08 | radiation | 20 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 17 | 18.12 | radiation | 30 | 30 | > th | dose independent | rect. | 15 | 1 |
| 272 | 18.75 | humidity | 60 | 10 | < th | dose independent | rect. | 14 | 2 |
| 279 | 18.88 | wind | 1 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 319 | 19.09 | humidity | 70 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 332 | 19.35 | radiation | 30 | 10 | < th | dose independent | sin | 13 | NA |
| 371 | 19.42 | wind | 1 | 90 | < th | dose independent | rect. | 15 | 1 |
| 392 | 19.47 | wind | 3 | 10 | < th | dose independent | rect. | 16 | 1 |
| 397 | 19.51 | wind | 3 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 506 | 19.65 | radiation | 20 | 10 | > th | dose independent | sin | 13 | NA |
| 523 | 19.68 | humidity | 60 | 10 | > th | dose independent | sin | 12 | NA |
| 529 | 19.72 | humidity | 60 | 10 | < th | dose independent | sin | 12 | NA |
| 618 | 19.88 | humidity | 60 | 10 | < th | dose dependent | sin | 12 | NA |
| 808 | 20.20 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 827 | 20.22 | radiation | 10 | 10 | > th | dose dependent | sin | 13 | NA |
| 830 | 20.24 | radiation | 30 | 10 | < th | dose dependent | sin | 14 | NA |
| 831 | 20.24 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 842 | 20.26 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 14 | 2 |