BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0635300 Os06g0635300|J080010K18
         (122 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14180.1  | chr5:4571442-4574413 REVERSE LENGTH=419            124   1e-29
AT2G15230.1  | chr2:6612666-6615204 FORWARD LENGTH=394             95   8e-21

>AT5G14180.1 | chr5:4571442-4574413 REVERSE LENGTH=419
          Length = 418

 Score =  124 bits (310), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 82/121 (67%), Gaps = 1/121 (0%)

Query: 2   PQSTSVRNLVHLSQLVRNGGVSRFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIFLTHG 61
           PQSTS +N++HL+Q VR+  + +++YG++  N+KHY Q  PP YN+S+IP+ +P+F ++G
Sbjct: 298 PQSTSTKNMIHLAQTVRDKELRKYNYGSSDRNIKHYGQAIPPAYNISAIPHELPLFFSYG 357

Query: 62  GEDYLGDVPDTRHLLRTLVKKHNSDSIEVIYVPDYAHADFIMAYNAPELIYGPMVDFFKR 121
           G D L DV D   LL    K H+ D + V +V DYAHADFIM   A +++Y  +  FFKR
Sbjct: 358 GLDSLADVKDVEFLLDQF-KYHDIDKMNVQFVKDYAHADFIMGVTAKDVVYNQVATFFKR 416

Query: 122 H 122
            
Sbjct: 417 Q 417



>AT2G15230.1 | chr2:6612666-6615204 FORWARD LENGTH=394
          Length = 393

 Score = 94.7 bits (234), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/119 (38%), Positives = 72/119 (60%), Gaps = 6/119 (5%)

Query: 2   PQSTSVRNLVHLSQLVRNGGVSRFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIFLTHG 61
           P  +SV+N+ HL Q++R G  +++DYG  K N++ Y   +PP + LS IP  +P+++ +G
Sbjct: 273 PHPSSVKNIRHLFQMIRKGTFAQYDYGYFK-NLRTYGLSKPPEFILSHIPASLPMWMGYG 331

Query: 62  GEDYLGDVPDTRHLLRTLVKKHNSDSIEVIYVPDYAHADFIMAYNAPELIYGPMVDFFK 120
           G D L DV D  H L  L       S E++Y+ DY H DF++  +A E +Y  M+ FF+
Sbjct: 332 GTDGLADVTDVEHTLAEL-----PSSPELLYLEDYGHIDFVLGSSAKEDVYKHMIQFFR 385



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,140,296
Number of extensions: 136618
Number of successful extensions: 485
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 2
Length of query: 122
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 36
Effective length of database: 8,748,793
Effective search space: 314956548
Effective search space used: 314956548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)