BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0635300 Os06g0635300|J080010K18
(122 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0635300 Conserved hypothetical protein 251 7e-68
Os04g0280600 140 2e-34
Os08g0529800 AB-hydrolase associated lipase region domain c... 105 7e-24
>Os06g0635300 Conserved hypothetical protein
Length = 122
Score = 251 bits (642), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 APQSTSVRNLVHLSQLVRNGGVSRFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIFLTH 60
APQSTSVRNLVHLSQLVRNGGVSRFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIFLTH
Sbjct: 1 APQSTSVRNLVHLSQLVRNGGVSRFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIFLTH 60
Query: 61 GGEDYLGDVPDTRHLLRTLVKKHNSDSIEVIYVPDYAHADFIMAYNAPELIYGPMVDFFK 120
GGEDYLGDVPDTRHLLRTLVKKHNSDSIEVIYVPDYAHADFIMAYNAPELIYGPMVDFFK
Sbjct: 61 GGEDYLGDVPDTRHLLRTLVKKHNSDSIEVIYVPDYAHADFIMAYNAPELIYGPMVDFFK 120
Query: 121 RH 122
RH
Sbjct: 121 RH 122
>Os04g0280600
Length = 428
Score = 140 bits (353), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/121 (48%), Positives = 87/121 (71%), Gaps = 2/121 (1%)
Query: 2 PQSTSVRNLVHLSQLVRNGGVSRFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIFLTHG 61
PQ+T+ +N++HL+Q++R G ++++DYGNA DN +HY Q PP Y++++IP P+FL++G
Sbjct: 304 PQATATKNMIHLAQMIRGGTIAKYDYGNAGDNREHYGQATPPAYDVTAIPGDFPLFLSYG 363
Query: 62 GEDYLGDVPDTRHLLRTLVKKH--NSDSIEVIYVPDYAHADFIMAYNAPELIYGPMVDFF 119
G D L DV D LLR L + H + D + V Y+ DYAHADF+MA NA E +Y P++ FF
Sbjct: 364 GRDSLSDVQDVSRLLRALGQSHSRDGDKLTVQYLADYAHADFVMARNAGERVYAPLMAFF 423
Query: 120 K 120
K
Sbjct: 424 K 424
>Os08g0529800 AB-hydrolase associated lipase region domain containing protein
Length = 438
Score = 105 bits (262), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
Query: 2 PQSTSVRNLVHLSQLVRNGGVSRFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIFLTHG 61
PQ TS + L+HL+Q VR+G ++++DY N+ Y Q PP Y++++IP PIFL++G
Sbjct: 316 PQPTSTKTLIHLAQTVRDGVLTKYDYVMPDANVARYGQADPPAYDMAAIPAWFPIFLSYG 375
Query: 62 GEDYLGDVPDTRHLLRTLVK-KHNSDSIEVIYVPDYAHADFIMAYNAPELIYGPMVDFFK 120
G D L D D LL L + H D + V Y+P AHADF++ A +L+Y ++ FF+
Sbjct: 376 GRDSLSDPADVALLLDDLRRGGHAGDRLTVQYLPQLAHADFVIGVCAKDLVYNDVISFFR 435
Query: 121 R 121
R
Sbjct: 436 R 436
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,060,515
Number of extensions: 222465
Number of successful extensions: 499
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 497
Number of HSP's successfully gapped: 3
Length of query: 122
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 34
Effective length of database: 12,440,969
Effective search space: 422992946
Effective search space used: 422992946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)