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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0631400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.56 (0.0365) R2 : 0.563
β1 : 0.973 (0.138) R2dD : 0.0527 R2D : 0.000355
β2 : 1.31 (0.0916) R2dC : 0.201 R2C : 0.213
β3 : -1.17 (0.103) R2dE : 0.134 R2E : 0.118
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.86 (0.0784) R2dN8 : 0.157 R2N8 : 0.177
σ : 0.682
deviance : 214.52
__
_____
C
peak time of C : 15.1
E
wheather : temperature
threshold : 25.63
memory length : 1391
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
211.98 0.684 5.54 1.11 1.32 -1.23 -0.861 0.412 -0.825 15.1 25.6 1392 -- --
212.1 0.678 5.56 1.03 1.29 -1.18 -0.939 -- -0.841 15 25.7 1384 -- --
214.38 0.682 5.54 1.15 1.32 -1.24 -- 0.658 -0.814 15.1 25.59 1393 -- --
214.52 0.682 5.56 0.973 1.31 -1.17 -- -- -0.86 15.1 25.63 1391 -- --
297.55 0.803 5.5 1.32 -- -1.76 -- 1.09 -0.665 -- 24.02 1201 -- --
273.25 0.775 5.58 0.578 1.45 -- -0.62 -- -0.962 15 -- -- -- --
274.52 0.776 5.58 0.564 1.45 -- -- -- -0.966 15 -- -- -- --
298.32 0.804 5.53 1.03 -- -1.66 -- -- -0.75 -- 24.1 1202 -- --
237.86 0.718 5.57 -- 1.34 -0.97 -- -- -0.959 15.2 25.68 1383 -- --
394.38 0.928 5.59 0.502 -- -- -- -- -1 -- -- -- -- --
282.91 0.787 5.6 -- 1.44 -- -- -- -1.03 15 -- -- -- --
324.24 0.839 5.57 -- -- -1.42 -- -- -0.91 -- 24.4 1201 -- --
401.04 0.935 5.6 -- -- -- -- -- -1.06 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 206.59 humidity 80 720 < th dose dependent rect. 20 1
2 207.30 humidity 70 1440 > th dose independent rect. 18 14
3 208.24 humidity 80 1440 < th dose dependent rect. 18 3
5 208.60 humidity 70 1440 > th dose independent rect. 18 6
6 208.61 humidity 70 1440 > th dose independent rect. 18 11
7 208.62 humidity 70 1440 > th dose independent rect. 18 3
9 208.62 humidity 70 1440 > th dose independent rect. 18 8
17 208.76 humidity 50 14400 > th dose independent rect. 16 1
18 209.25 humidity 50 14400 < th dose independent rect. 16 18
20 210.32 temperature 25 1440 > th dose dependent rect. 18 1
21 210.34 humidity 50 14400 < th dose independent rect. 16 2
36 210.46 humidity 50 14400 > th dose independent rect. 16 11
37 210.48 humidity 50 14400 > th dose independent rect. 16 8
38 210.49 humidity 50 14400 > th dose independent rect. 16 13
41 210.50 humidity 50 14400 > th dose independent rect. 16 16
44 210.54 temperature 25 1440 > th dose dependent rect. 15 19
60 211.25 humidity 70 1440 < th dose independent rect. 18 14
74 211.64 temperature 25 1440 > th dose dependent rect. 7 2
76 211.73 humidity 70 1440 < th dose independent rect. 18 2
88 211.76 temperature 25 720 > th dose dependent rect. 18 15
94 211.89 temperature 25 1440 > th dose dependent rect. 15 9
96 211.95 temperature 25 1440 > th dose dependent rect. 16 5
102 212.05 temperature 25 1440 > th dose dependent rect. 7 17
178 212.54 temperature 25 1440 > th dose dependent no NA NA
187 212.58 temperature 25 1440 > th dose dependent rect. 22 23
189 212.59 temperature 25 1440 > th dose dependent rect. 20 23
192 212.62 temperature 25 1440 > th dose dependent rect. 18 23
201 212.68 humidity 70 14400 < th dose independent rect. 19 12
222 212.79 humidity 60 14400 < th dose dependent rect. 17 1
239 212.91 humidity 70 720 > th dose dependent rect. 19 2
243 212.93 temperature 25 1440 > th dose dependent sin 19 NA
338 213.51 temperature 30 1440 < th dose independent rect. 11 1
347 213.56 humidity 70 14400 < th dose independent rect. 19 3
391 213.82 temperature 30 1440 > th dose independent rect. 11 1
411 213.92 humidity 50 14400 < th dose dependent rect. 16 18
413 213.93 temperature 30 1440 < th dose independent rect. 18 19
436 214.00 temperature 25 720 > th dose dependent rect. 20 1
576 214.89 wind 5 43200 > th dose independent rect. 20 1
579 214.92 temperature 30 1440 > th dose independent rect. 18 19
599 215.07 temperature 30 1440 < th dose independent rect. 16 8
604 215.10 temperature 30 1440 < th dose independent rect. 16 13
605 215.10 temperature 30 1440 < th dose independent rect. 16 16
608 215.11 temperature 30 1440 < th dose independent rect. 16 11
611 215.12 temperature 30 1440 < th dose independent rect. 16 4
659 215.33 temperature 30 1440 > th dose independent rect. 16 3
677 215.35 temperature 30 1440 < th dose independent rect. 9 12
679 215.35 temperature 30 1440 < th dose independent rect. 9 23
684 215.36 temperature 30 1440 < th dose independent rect. 9 15
685 215.37 temperature 30 1440 < th dose independent rect. 9 10
688 215.37 temperature 30 1440 < th dose independent rect. 9 17
701 215.39 wind 5 43200 < th dose independent rect. 20 1
705 215.40 humidity 70 1440 > th dose independent sin 12 NA
751 215.66 humidity 80 720 < th dose independent rect. 20 1
764 215.71 radiation 20 1440 > th dose dependent rect. 15 17
770 215.77 temperature 30 1440 < th dose independent sin 11 NA
776 215.78 temperature 30 1440 < th dose independent rect. 6 15
778 215.79 temperature 30 1440 < th dose independent rect. 6 18
779 215.80 temperature 30 1440 < th dose independent rect. 6 13
782 215.80 temperature 30 1440 < th dose independent rect. 4 17
796 215.81 temperature 30 1440 < th dose independent rect. 1 20
799 215.81 temperature 30 1440 < th dose independent rect. 4 22
801 215.81 temperature 30 1440 < th dose independent rect. 23 22
802 215.81 temperature 30 1440 < th dose independent rect. 1 23
842 215.83 temperature 30 1440 < th dose independent no NA NA
856 215.83 temperature 30 1440 < th dose independent rect. 23 20
873 215.84 temperature 30 1440 < th dose independent rect. 20 23
915 215.93 temperature 30 1440 > th dose independent rect. 10 9
964 216.06 temperature 30 1440 < th dose independent sin 19 NA
993 216.18 temperature 30 1440 < th dose independent rect. 6 8