BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0631400 Os06g0631400|AK106231
         (529 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24200.1  | chr4:12556927-12559929 REVERSE LENGTH=1001          71   1e-12

>AT4G24200.1 | chr4:12556927-12559929 REVERSE LENGTH=1001
          Length = 1000

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 174/446 (39%), Gaps = 74/446 (16%)

Query: 130  GIDLNENQCTEEVDCHTKSTLSNSINLSTPIAVAASRTSSVFPAR--LHFEGELGWKGSA 187
            G DLN++ C +E D      +S++     P++V+ S +SS  PA    H E  L  KGSA
Sbjct: 583  GFDLNQDICPDETDV----IMSSTSTTPAPMSVSFSVSSSAMPAAAPWHLERSLSGKGSA 638

Query: 188  ATSAFRPASPRCTPDG---EKSVSASSQRTGNALFDLNVSESDNATAGEPLSAAILPLSS 244
            ATS F  A P   P G   EK V +          DLNV+E  +    +       P SS
Sbjct: 639  ATSVFHSALPHKVPSGDLREKQVISRG-------IDLNVAEVGDDQVEDLTPWKQFPFSS 691

Query: 245  DIVRKDAS----ATVGLNSLELDLNCPCDDEEA---AITTSNVPSFWNRQQCNGDWSHPX 297
               R   S    +  G +   LDLNC  +D+E    + +      F +            
Sbjct: 692  SNSRGGESSHEASLRGSSKFNLDLNCMNEDDEMPPPSESKMETRLFLSHNGQQSASPVSS 751

Query: 298  XXXXXRQPAVRNFDLNDNTPIVDGFLRGADES--------SVKTSGRDVSDHSAVTILGK 349
                 +     NFDLND       F+   D+         S  + G    +   ++ILG 
Sbjct: 752  SSVAQQSGKEVNFDLNDRPQF---FIDSRDQGPYYGRHPWSTASYGGHKLEEPGISILGT 808

Query: 350  RIVLGQKEHSHQNEHNFL--GPSVE---SRDPARSMQSYGHTP-------PDXXXXXXXX 397
            ++   +K+   Q   +FL  G S+E        R+  S G  P       P         
Sbjct: 809  KVEADRKDSVPQMA-SFLSNGKSLEPATGLHMGRTGNSLGLAPGVSFSPAPMYGYNGLTG 867

Query: 398  XXALSFPSPFYAPGT-VPYMVDAKGTPV-IPPLPG---FGVPTVPNLGVGTSHPSLGSRA 452
               LS  SP Y PGT +PYMVD++GTPV +P + G   +  P  P       H  +    
Sbjct: 868  PPGLSMSSPMYVPGTAIPYMVDSRGTPVMMPQIIGSAPYVQPPFPQ-----QHMFMSLAG 922

Query: 453  IPPSSELSYFHPSMDLNYGRSYEGARREGASYWPVSFQGQTMFVDERMG---------NM 503
              PS+  S   P+ D N G   E   RE  +        Q+  + E  G         ++
Sbjct: 923  GSPSTNGS-MRPNFDQNSGFGLEIGNRESLNLRQFLSPSQSGAMGEHSGANVEPSSSSSI 981

Query: 504  SQGGSSGVPVLKRKEPDLGWDLYPRR 529
            S GG       KRKEP+  W+  P R
Sbjct: 982  SIGG-------KRKEPEPRWEFPPWR 1000



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,640,515
Number of extensions: 442291
Number of successful extensions: 841
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 838
Number of HSP's successfully gapped: 3
Length of query: 529
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 426
Effective length of database: 8,282,721
Effective search space: 3528439146
Effective search space used: 3528439146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)