BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0631400 Os06g0631400|AK106231
(529 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0631400 Conserved hypothetical protein 933 0.0
>Os06g0631400 Conserved hypothetical protein
Length = 529
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/529 (87%), Positives = 463/529 (87%)
Query: 1 MTSFXXXXXXXXXXXXXXXXXTSTPLAEYDDTDALEVARLVAIEVEREVIDYRGPFCGSP 60
MTSF TSTPLAEYDDTDALEVARLVAIEVEREVIDYRGPFCGSP
Sbjct: 1 MTSFGDSSKAADKKSKAEKGDTSTPLAEYDDTDALEVARLVAIEVEREVIDYRGPFCGSP 60
Query: 61 DINSRRSDSPDLEARRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITDDSGTFSR 120
DINSRRSDSPDLEARRQ ITDDSGTFSR
Sbjct: 61 DINSRRSDSPDLEARRQPEPPMDEPDNDNKSSTTGEDSGSSSSMKEDGSGITDDSGTFSR 120
Query: 121 KHTRSMKLGGIDLNENQCTEEVDCHTKSTLSNSINLSTPIAVAASRTSSVFPARLHFEGE 180
KHTRSMKLGGIDLNENQCTEEVDCHTKSTLSNSINLSTPIAVAASRTSSVFPARLHFEGE
Sbjct: 121 KHTRSMKLGGIDLNENQCTEEVDCHTKSTLSNSINLSTPIAVAASRTSSVFPARLHFEGE 180
Query: 181 LGWKGSAATSAFRPASPRCTPDGEKSVSASSQRTGNALFDLNVSESDNATAGEPLSAAIL 240
LGWKGSAATSAFRPASPRCTPDGEKSVSASSQRTGNALFDLNVSESDNATAGEPLSAAIL
Sbjct: 181 LGWKGSAATSAFRPASPRCTPDGEKSVSASSQRTGNALFDLNVSESDNATAGEPLSAAIL 240
Query: 241 PLSSDIVRKDASATVGLNSLELDLNCPCDDEEAAITTSNVPSFWNRQQCNGDWSHPXXXX 300
PLSSDIVRKDASATVGLNSLELDLNCPCDDEEAAITTSNVPSFWNRQQCNGDWSHP
Sbjct: 241 PLSSDIVRKDASATVGLNSLELDLNCPCDDEEAAITTSNVPSFWNRQQCNGDWSHPSSSS 300
Query: 301 XXRQPAVRNFDLNDNTPIVDGFLRGADESSVKTSGRDVSDHSAVTILGKRIVLGQKEHSH 360
RQPAVRNFDLNDNTPIVDGFLRGADESSVKTSGRDVSDHSAVTILGKRIVLGQKEHSH
Sbjct: 301 SSRQPAVRNFDLNDNTPIVDGFLRGADESSVKTSGRDVSDHSAVTILGKRIVLGQKEHSH 360
Query: 361 QNEHNFLGPSVESRDPARSMQSYGHTPPDXXXXXXXXXXALSFPSPFYAPGTVPYMVDAK 420
QNEHNFLGPSVESRDPARSMQSYGHTPPD ALSFPSPFYAPGTVPYMVDAK
Sbjct: 361 QNEHNFLGPSVESRDPARSMQSYGHTPPDYSVVSYSSHSALSFPSPFYAPGTVPYMVDAK 420
Query: 421 GTPVIPPLPGFGVPTVPNLGVGTSHPSLGSRAIPPSSELSYFHPSMDLNYGRSYEGARRE 480
GTPVIPPLPGFGVPTVPNLGVGTSHPSLGSRAIPPSSELSYFHPSMDLNYGRSYEGARRE
Sbjct: 421 GTPVIPPLPGFGVPTVPNLGVGTSHPSLGSRAIPPSSELSYFHPSMDLNYGRSYEGARRE 480
Query: 481 GASYWPVSFQGQTMFVDERMGNMSQGGSSGVPVLKRKEPDLGWDLYPRR 529
GASYWPVSFQGQTMFVDERMGNMSQGGSSGVPVLKRKEPDLGWDLYPRR
Sbjct: 481 GASYWPVSFQGQTMFVDERMGNMSQGGSSGVPVLKRKEPDLGWDLYPRR 529
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,413,701
Number of extensions: 746607
Number of successful extensions: 1498
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1497
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 424
Effective length of database: 11,553,331
Effective search space: 4898612344
Effective search space used: 4898612344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)