Os06g0600700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Agenet domain containing protein.
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Os06g0600700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Agenet domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.99 | 0.502 | 9.25 | 0.16 | 2.55 | -0.879 | -0.469 | 12.2 | -0.331 | 5.47 | 30.58 | 1485 | -- | -- |
| 118.43 | 0.507 | 9.49 | -1.9 | 2.53 | 0.504 | -0.273 | -- | -0.381 | 5.46 | 30.68 | 5817 | -- | -- |
| 114.44 | 0.498 | 9.26 | 0.102 | 2.55 | -0.913 | -- | 12.9 | -0.331 | 5.48 | 30.6 | 1533 | -- | -- |
| 118.55 | 0.507 | 9.49 | -1.89 | 2.57 | 0.532 | -- | -- | -0.36 | 5.45 | 30.54 | 5824 | -- | -- |
| 448.65 | 0.987 | 9.22 | 0.72 | -- | -1.02 | -- | 14.9 | -0.228 | -- | 30.06 | 1330 | -- | -- |
| 131.73 | 0.538 | 9.51 | -1.75 | 2.61 | -- | -0.337 | -- | -0.426 | 5.43 | -- | -- | -- | -- |
| 132.01 | 0.538 | 9.51 | -1.75 | 2.6 | -- | -- | -- | -0.425 | 5.44 | -- | -- | -- | -- |
| 447.29 | 0.985 | 9.55 | -1.92 | -- | 0.88 | -- | -- | -0.353 | -- | 34.4 | 7047 | -- | -- |
| 208.11 | 0.672 | 9.46 | -- | 2.53 | 0.322 | -- | -- | -0.218 | 5.43 | 34.7 | 7179 | -- | -- |
| 485.1 | 1.03 | 9.55 | -1.66 | -- | -- | -- | -- | -0.361 | -- | -- | -- | -- | -- |
| 212.64 | 0.682 | 9.47 | -- | 2.58 | -- | -- | -- | -0.23 | 5.47 | -- | -- | -- | -- |
| 537.42 | 1.08 | 9.49 | -- | -- | 0.599 | -- | -- | -0.154 | -- | 34.3 | 7054 | -- | -- |
| 557.95 | 1.1 | 9.5 | -- | -- | -- | -- | -- | -0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.10 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 3 |
| 21 | 111.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 22 | 111.17 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 23 | 111.20 | radiation | 20 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 28 | 111.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 34 | 111.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 36 | 111.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 39 | 111.69 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 41 | 111.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 43 | 111.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 10 |
| 45 | 111.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 49 | 111.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 53 | 111.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 61 | 111.92 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 108 | 112.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 117 | 112.49 | radiation | 40 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 125 | 112.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 131 | 112.71 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 132 | 112.75 | temperature | 30 | 1440 | < th | dose independent | sin | 9 | NA |
| 186 | 113.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 189 | 113.12 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 199 | 113.22 | temperature | 30 | 1440 | > th | dose independent | sin | 9 | NA |
| 200 | 113.23 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 210 | 113.35 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 214 | 113.39 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 20 |
| 255 | 113.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 261 | 113.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 265 | 113.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 283 | 113.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 291 | 113.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 308 | 113.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 374 | 113.99 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 376 | 114.00 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 2 |
| 377 | 114.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 2 |
| 381 | 114.01 | temperature | 30 | 1440 | > th | dose dependent | sin | 5 | NA |
| 383 | 114.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 406 | 114.08 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 544 | 114.32 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 664 | 114.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 717 | 114.62 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 725 | 114.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 9 |
| 786 | 114.81 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 6 |
| 828 | 114.91 | temperature | 25 | 270 | < th | dose dependent | rect. | 4 | 12 |
| 829 | 114.92 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 10 |
| 833 | 114.94 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 983 | 115.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 1 |