BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0600700 Os06g0600700|AK064997
(300 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G32440.2 | chr4:15657295-15659354 FORWARD LENGTH=394 125 4e-29
AT5G20030.1 | chr5:6764971-6766036 REVERSE LENGTH=327 122 3e-28
AT2G25590.1 | chr2:10891295-10893772 FORWARD LENGTH=382 116 1e-26
AT1G06340.1 | chr1:1933583-1933987 REVERSE LENGTH=135 57 2e-08
AT1G09320.1 | chr1:3010270-3012228 REVERSE LENGTH=518 54 1e-07
AT3G06520.1 | chr3:2020284-2021955 FORWARD LENGTH=467 50 1e-06
>AT4G32440.2 | chr4:15657295-15659354 FORWARD LENGTH=394
Length = 393
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 21/235 (8%)
Query: 1 MKLVKGSKVEVLQEAEVPLGSWRGAEIVLGNGQSFYVRYDPSPVDSCAAV-ERVQRRLIR 59
M++ KGS+VEV E P G+WR AEIV GNG ++ VR+ ++ AV E+V R++IR
Sbjct: 1 MRIRKGSRVEVFSNKEAPYGAWRCAEIVSGNGHTYNVRFYSFQIEHEEAVMEKVPRKIIR 60
Query: 60 PCPPRDDSVCWAVGDILEAFDSYSWKIAEMVRVLGKDFYLVRLLGSSLELRTHASELRLR 119
PCPP D W G+++E D++SWK A + L +Y+VRLLG+ EL H LR R
Sbjct: 61 PCPPLVDVERWDTGELVEVLDNFSWKAATVREELSGHYYVVRLLGTPEELTFHKVNLRAR 120
Query: 120 KHWKDGKWTVLQKDSTKCFGGSFRGQPKSGNL-GSNFGKQRQPYCAMDNNLLLKNQKALE 178
K W+D +W + G G KS L GS+ ++ QP+ N++ L +
Sbjct: 121 KSWQDERWVAI---------GKISGSLKSSTLTGSDVHQKLQPH---RNSMPLHEPSVV- 167
Query: 179 GDKSRGMKRKSSAITHPTQCSEVTRGM-KRLQTPHRDGRHAALVAGVSPRLAEKG 232
+R +KR S + ++C+E G K++++ ++G+ V +S R +G
Sbjct: 168 --SARLLKRPSP--YNWSECAESCTGNPKKMRSLEKEGQQQK-VDAISCRPENRG 217
>AT5G20030.1 | chr5:6764971-6766036 REVERSE LENGTH=327
Length = 326
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 93/146 (63%), Gaps = 6/146 (4%)
Query: 1 MKLVKGSKVEVLQEAEVPLGSWRGAEIVLGNGQSFYVRYDPSPVDSCAAVERVQRRLIRP 60
M+ KG+KVEVL ++ VP G+WR AEI+ GNG + V YD + ERV R+ +RP
Sbjct: 1 MRFNKGTKVEVLSKSSVPSGAWRSAEIISGNGHYYTVMYDHND-----GTERVPRKSMRP 55
Query: 61 CPPRDDSV-CWAVGDILEAFDSYSWKIAEMVRVLGKDFYLVRLLGSSLELRTHASELRLR 119
PPR + W GDILE F S SWK+A + +VLG +LVRLLGSSL+ + S++R+R
Sbjct: 56 EPPRLQVLDAWCPGDILEVFQSCSWKMAIVSKVLGNGCFLVRLLGSSLKFKVTKSDIRVR 115
Query: 120 KHWKDGKWTVLQKDSTKCFGGSFRGQ 145
+ W+D +W ++ + +++ + G+
Sbjct: 116 QSWQDNEWIMIGQGTSRLSAQTSTGE 141
>AT2G25590.1 | chr2:10891295-10893772 FORWARD LENGTH=382
Length = 381
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 85/137 (62%), Gaps = 2/137 (1%)
Query: 1 MKLVKGSKVEVLQEAEVPLGSWRGAEIVLGNGQSFYVRYDPSPVDSCAAVE-RVQRRLIR 59
M+ +GS+VEV E G WR AEI+ GNG ++ VRY + + VE RV R++IR
Sbjct: 1 MRFRRGSRVEVFSIKEASYGVWRSAEIISGNGHTYNVRYYSFEIANNEVVEDRVPRKIIR 60
Query: 60 PCPPRDDSVCWAVGDILEAFDS-YSWKIAEMVRVLGKDFYLVRLLGSSLELRTHASELRL 118
PCPP+ D W G+++E D+ SWK A ++ VL +Y+VRLLG+ EL H LR
Sbjct: 61 PCPPQVDVDRWEAGELVEVLDNNISWKTATVLEVLSGRYYVVRLLGAKAELTVHKVYLRA 120
Query: 119 RKHWKDGKWTVLQKDST 135
R+ W+D +W ++ K+++
Sbjct: 121 RQSWQDERWVMIGKETS 137
>AT1G06340.1 | chr1:1933583-1933987 REVERSE LENGTH=135
Length = 134
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 1 MKLVKGSKVEVLQEAEVPLGSWRGAEIV--LGNGQSFYVRYDPSPVDSCAA---VERVQR 55
M+ VKG +VEV + + LGS+ GA +V G + ++Y D+ + VE +
Sbjct: 1 MEFVKGDQVEVCSKEDGFLGSYFGATVVSKTPEGSYYKIKYKNLVSDTDQSKRLVEVISA 60
Query: 56 RLIRPCPPRDDSVCWAVGDILEAFDSYSWKIAEMVRVLGKDFYLVRLLGSSLELRTHASE 115
+RP PP+ V GD ++AFD W + E V + ++ Y V + EL
Sbjct: 61 DELRPMPPKSLHVLIRCGDKVDAFDKDGWWVGE-VTAVRRNIYSVYFSTTDEELEYPLYS 119
Query: 116 LRLRKHWKDGKWT 128
LR W +G W
Sbjct: 120 LRKHHEWVNGSWV 132
>AT1G09320.1 | chr1:3010270-3012228 REVERSE LENGTH=518
Length = 517
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Query: 6 GSKVEVLQEAEVPLGSWRGAEIVLGNGQS-FYVRY-DPSPVDSCAAVERVQRRL-IRPCP 62
G+ VEV + E G W A++V G+ F V Y D D ++ L IRP P
Sbjct: 224 GTVVEVSSDEEGFQGCWFAAKVVEPVGEDKFLVEYRDLREKDGIEPLKEETDFLHIRPPP 283
Query: 63 PRDDSVCWAVGDILEAFDSYSWKIAEMVRVLGKDFYLVRLLGSSLELRTHASELRLRKHW 122
PRD+ + +AVGD + AF + W + ++ + + S ++R LRL K W
Sbjct: 284 PRDEDIDFAVGDKINAFYNDGWWVGVVIDGMKHGTVGIYFRQSQEKMRFGRQGLRLHKDW 343
Query: 123 KDGKWTV 129
DG W +
Sbjct: 344 VDGTWQL 350
>AT3G06520.1 | chr3:2020284-2021955 FORWARD LENGTH=467
Length = 466
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 5 KGSKVEVLQEAEVPLGSWRGAEIVLGNGQSFYV----RYDPSPVDSCAAVERVQRRLIRP 60
KG+ VEV E + GSW A I+ G Y+ ++ +S + V+ + IRP
Sbjct: 171 KGALVEVRSEEKAYKGSWYCARILCLLGDDKYIVEHLKFSRDDGESIPLRDVVEAKDIRP 230
Query: 61 CPPRDDS--VCWAVGDILEAFDSYSWKIAEMVRVL--GKDFYLVRLLGSSLELRTHASEL 116
PP + S VC+ G I++A+ + W + + +VL G + Y V ++ + E L
Sbjct: 231 VPPSELSPVVCYEPGVIVDAWFNKRWWTSRVSKVLGGGSNKYSVFIISTGEETTILNFNL 290
Query: 117 RLRKHWKDGKWTVLQK 132
R K W +G+W + K
Sbjct: 291 RPHKDWINGQWVIPSK 306
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,736,961
Number of extensions: 291577
Number of successful extensions: 651
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 6
Length of query: 300
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,419,801
Effective search space: 1700799802
Effective search space used: 1700799802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)