BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0600700 Os06g0600700|AK064997
         (300 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0600700  Agenet domain containing protein                    574   e-164

>Os06g0600700 Agenet domain containing protein
          Length = 300

 Score =  574 bits (1480), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 282/300 (94%), Positives = 282/300 (94%)

Query: 1   MKLVKGSKVEVLQEAEVPLGSWRGAEIVLGNGQSFYVRYDPSPVDSCAAVERVQRRLIRP 60
           MKLVKGSKVEVLQEAEVPLGSWRGAEIVLGNGQSFYVRYDPSPVDSCAAVERVQRRLIRP
Sbjct: 1   MKLVKGSKVEVLQEAEVPLGSWRGAEIVLGNGQSFYVRYDPSPVDSCAAVERVQRRLIRP 60

Query: 61  CPPRDDSVCWAVGDILEAFDSYSWKIAEMVRVLGKDFYLVRLLGSSLELRTHASELRLRK 120
           CPPRDDSVCWAVGDILEAFDSYSWKIAEMVRVLGKDFYLVRLLGSSLELRTHASELRLRK
Sbjct: 61  CPPRDDSVCWAVGDILEAFDSYSWKIAEMVRVLGKDFYLVRLLGSSLELRTHASELRLRK 120

Query: 121 HWKDGKWTVLQKDSTKCFGGSFRGQPKSGNLGSNFGKQRQPYCAMDNNLLLKNQKALEGD 180
           HWKDGKWTVLQKDSTKCFGGSFRGQPKSGNLGSNFGKQRQPYCAMDNNLLLKNQKALEGD
Sbjct: 121 HWKDGKWTVLQKDSTKCFGGSFRGQPKSGNLGSNFGKQRQPYCAMDNNLLLKNQKALEGD 180

Query: 181 KSRGMKRKSSAITHPTQCSEVTRGMKRLQTPHRDGRHAALVAGVSPRLAEKGRSRRLVKH 240
           KSRGMKRKSSAITHPTQCSEVTRGMKRLQTPHRDGRHAALVAGVSPRLAEKGRSRRLVKH
Sbjct: 181 KSRGMKRKSSAITHPTQCSEVTRGMKRLQTPHRDGRHAALVAGVSPRLAEKGRSRRLVKH 240

Query: 241 PSVGPCRWRSLPHGLLYVKCGNIPSNFCWYLVXXXXXXXXXXXXXXXXXXDWPLNFSRTL 300
           PSVGPCRWRSLPHGLLYVKCGNIPSNFCWYLV                  DWPLNFSRTL
Sbjct: 241 PSVGPCRWRSLPHGLLYVKCGNIPSNFCWYLVCFCYSFCFSIIFSAAFSCDWPLNFSRTL 300



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,033,627
Number of extensions: 499226
Number of successful extensions: 1104
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1104
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 200
Effective length of database: 11,814,401
Effective search space: 2362880200
Effective search space used: 2362880200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)