Os06g0597900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0597900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SOUL heme-binding protein family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	6.57	(0.0687)	R²	:	0.552
β₁	:	-0.913	(0.246)	R²_dD	:	0.0143	R²_D	:	-0.00744
β₂	:	2.81	(0.163)	R²_dC	:	0.302	R²_C	:	0.365
β₃	:	-2.33	(0.226)	R²_dE	:	0.144	R²_E	:	0.23
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.458	(0.161)	R²_dN8	:	0.0137	R²_N8	:	0.0425
σ	:	1.25
deviance	:	715.55
__

_____

C
peak time of C	:	10.3
E
wheather	:	humidity
threshold	:	60.89
memory length	:	4219
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	13
open length of G	:	0.828

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
711.85	1.25	6.56	-0.907	2.84	-2.24	-0.21	-1.43	-0.508	10.3	61	4222	13	0.826
715.55	1.25	6.57	-0.911	2.81	-2.33	-0.0317	--	-0.455	10.3	60.92	4219	13	0.83
711.72	1.24	6.56	-0.927	2.82	-2.26	--	-1.43	-0.496	10.3	60.99	4216	13	0.83
715.55	1.25	6.57	-0.913	2.81	-2.33	--	--	-0.458	10.3	60.89	4219	13	0.828
892.8	1.39	6.73	-0.782	--	-2.58	--	-1.05	-0.809	--	58.85	805	13.7	2.17
882.11	1.39	6.74	-0.575	3.12	--	-0.353	--	-1.25	10.3	--	--	--	--
882.61	1.39	6.74	-0.589	3.12	--	--	--	-1.25	10.3	--	--	--	--
805.92	1.32	6.73	-0.731	--	-2.92	--	--	-0.905	--	55	731	14.3	4.6
731.61	1.26	6.57	--	2.92	-2.26	--	--	-0.421	10.3	61	4224	13	0.883
1474.36	1.79	6.82	-0.637	--	--	--	--	-1.25	--	--	--	--	--
891.74	1.4	6.73	--	3.12	--	--	--	-1.18	10.3	--	--	--	--
817.42	1.33	6.75	--	--	-2.95	--	--	-0.954	--	54.04	681	14.3	4.73
1485.05	1.8	6.81	--	--	--	--	--	-1.18	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	720.28	humidity	90.0	14400	< th	dose dependent	rect.	16	2
3	721.55	humidity	50.0	14400	> th	dose dependent	rect.	16	2
5	722.03	humidity	90.0	14400	< th	dose dependent	rect.	11	8
17	723.05	humidity	50.0	14400	> th	dose dependent	rect.	11	8
29	723.52	humidity	70.0	14400	> th	dose independent	rect.	17	1
58	724.45	humidity	60.0	4320	> th	dose independent	rect.	13	1
63	724.70	humidity	60.0	14400	> th	dose independent	rect.	12	4
70	725.07	humidity	70.0	14400	< th	dose dependent	rect.	16	16
72	725.20	humidity	70.0	14400	< th	dose dependent	rect.	16	6
94	725.50	humidity	70.0	14400	< th	dose independent	rect.	17	2
96	725.59	humidity	60.0	14400	> th	dose independent	rect.	12	6
117	726.07	humidity	60.0	14400	> th	dose independent	rect.	12	17
121	726.09	humidity	60.0	14400	> th	dose independent	rect.	12	12
241	728.13	humidity	90.0	14400	< th	dose dependent	sin	21	NA
263	728.70	humidity	60.0	14400	> th	dose independent	sin	15	NA
272	728.76	humidity	60.0	14400	< th	dose independent	rect.	12	4
273	728.76	humidity	60.0	14400	< th	dose independent	rect.	12	6
300	729.01	humidity	50.0	14400	> th	dose dependent	sin	21	NA
328	729.23	precipitation	0.1	14400	< th	dose independent	rect.	13	7
331	729.23	precipitation	0.1	14400	< th	dose dependent	rect.	13	7
335	729.25	humidity	70.0	14400	< th	dose dependent	sin	13	NA
342	729.39	precipitation	0.1	14400	> th	dose independent	rect.	13	7
399	730.22	humidity	70.0	14400	< th	dose independent	rect.	17	15
415	730.32	humidity	70.0	14400	> th	dose independent	rect.	17	15
446	730.70	precipitation	0.1	14400	< th	dose independent	rect.	17	3
447	730.70	humidity	70.0	14400	< th	dose independent	rect.	17	5
456	730.70	precipitation	0.1	14400	< th	dose dependent	rect.	17	3
502	731.22	humidity	60.0	14400	< th	dose independent	sin	14	NA
505	731.23	precipitation	0.1	14400	> th	dose independent	rect.	17	3
523	731.53	precipitation	0.1	14400	< th	dose independent	rect.	15	5
524	731.53	precipitation	0.1	14400	< th	dose dependent	rect.	15	5
548	731.71	humidity	70.0	14400	> th	dose independent	rect.	17	12
557	731.75	humidity	70.0	14400	> th	dose independent	rect.	17	7
583	731.94	precipitation	0.1	14400	> th	dose independent	rect.	15	5
853	734.16	precipitation	0.1	14400	> th	dose dependent	rect.	13	4
894	734.58	wind	3.0	14400	< th	dose independent	rect.	24	1
950	734.96	precipitation	0.1	14400	> th	dose dependent	rect.	13	7