BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0597900 Os06g0597900|AK065544
(381 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20140.2 | chr5:6799066-6800892 REVERSE LENGTH=396 431 e-121
AT2G37970.1 | chr2:15891027-15891704 FORWARD LENGTH=226 84 1e-16
AT3G10130.1 | chr3:3131122-3133158 REVERSE LENGTH=310 69 5e-12
>AT5G20140.2 | chr5:6799066-6800892 REVERSE LENGTH=396
Length = 395
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/292 (69%), Positives = 238/292 (81%), Gaps = 2/292 (0%)
Query: 78 PHLFDDVGVDRSAYDDRVRFRDPITRHDTIDGYXXXXXXXXXXFRPDFYLHHVEQTGPYE 137
PHLFDD G+D++AYD+RV+FRDPIT+HDTI GY F P F LH +QTGPYE
Sbjct: 73 PHLFDDQGIDKTAYDERVKFRDPITKHDTISGYLFNIAFLKNIFTPQFQLHWAKQTGPYE 132
Query: 138 ITTRWTMVMKFVLLPWKPELVFTGLSIMGVNPQNLKFCSHVDIWDSIQNNEYFSFEGLGD 197
ITTRWTMVMKF+ LPWKPELVFTGLSIM VNP+ KFCSH+D+WDSI+NN+YFS EGL D
Sbjct: 133 ITTRWTMVMKFIPLPWKPELVFTGLSIMEVNPETNKFCSHLDLWDSIKNNDYFSLEGLVD 192
Query: 198 VFKQLRIYKTPDIETPKYLILKRTANYEIRSYPPFLIVEAKGDKLTGSSGFNNVTGYIFG 257
VFKQLRIYKTPD+ETPKY ILKRTANYE+R+Y PF++VE GDKL+GSSGFNNV GYIFG
Sbjct: 193 VFKQLRIYKTPDLETPKYQILKRTANYEVRNYEPFIVVETIGDKLSGSSGFNNVAGYIFG 252
Query: 258 KNASSETIAMTTPVFTQASDDKL-SDVSIQIVLPMNKDLDSLPAPNTEAVNLRKVEGGIA 316
KN++ E I MTTPVFTQ +D +L SDVS+QIV+P KDL SLP PN E VNL+K+EGG A
Sbjct: 253 KNSTMEKIPMTTPVFTQTTDTQLSSDVSVQIVIPSGKDLSSLPMPNEEKVNLKKLEGGFA 312
Query: 317 AVKKFSGRPKEEIVIQKEKELRSQLLKDVLKPQHGCLLARYNDP-RTQSFIM 367
A KFSG+P E++V KE ELRS L KD L+ + GC+LARYNDP RT +FIM
Sbjct: 313 AAVKFSGKPTEDVVQAKENELRSSLSKDGLRAKKGCMLARYNDPGRTWNFIM 364
>AT2G37970.1 | chr2:15891027-15891704 FORWARD LENGTH=226
Length = 225
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 96/221 (43%), Gaps = 51/221 (23%)
Query: 195 LGDVFKQLRIYKTPDIETPKYLILKRTANYEIRSYPPFLIVEA-------KGDKLTGSSG 247
+G VF ++ + ETPKY + K YEIR YPP + E KGDK G
Sbjct: 11 MGMVFGKIAV------ETPKYTVTKSGDGYEIREYPPAVAAEVTYDASEFKGDK---DGG 61
Query: 248 FNNVTGYI--FGK--NASSETIAMTTPVFTQ----------------------------- 274
F + YI FGK N E IAMT PV T+
Sbjct: 62 FQLLAKYIGVFGKPENEKPEKIAMTAPVITKEGEKIAMTAPVITKESEKIEMTSPVVTKE 121
Query: 275 -ASDDKLSDVSIQIVLP-MNKDLDSLPAPNTEAVNLRKVEGGIAAVKKFSGRPKEEIVIQ 332
+ + V++Q +LP M K + P P E V +++ G V KFSG E +V +
Sbjct: 122 GGGEGRKKLVTMQFLLPSMYKKAEEAPRPTDERVVIKEEGGRKYGVIKFSGIASESVVSE 181
Query: 333 KEKELRSQLLKDVLKPQHGCLLARYNDPRTQSFIMRNEVLI 373
K K+L S L KD K +LARYN P T NEV+I
Sbjct: 182 KVKKLSSHLEKDGFKITGDFVLARYNPPWTLPPFRTNEVMI 222
>AT3G10130.1 | chr3:3131122-3133158 REVERSE LENGTH=310
Length = 309
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 98/196 (50%), Gaps = 27/196 (13%)
Query: 208 PDIETPKYLILKRTANYEIRSYPPFLIVEAKGDKLTG------SSGFNNVTGYIFGKNAS 261
PD+ET + +L RT YEIR P+ + E TG S FN + Y+FGKN
Sbjct: 112 PDLETMNFRVLFRTDKYEIRQVEPYFVAETIMPGETGFDSYGASKSFNVLAEYLFGKNTI 171
Query: 262 SETIAMTTPVFT---QASDDKLSDVSIQIVLPMNKDLD--------------SLPAPNTE 304
E + MTTPV T Q+ +K+ +++ ++ KD + +LP P
Sbjct: 172 KEKMEMTTPVVTRKVQSVGEKM-EMTTPVITSKAKDQNQWRMSFVMPSKYGSNLPLPKDP 230
Query: 305 AVNLRKVEGGIAAVKKFSGRPKEEIVIQKEKELRSQLLKD-VLKPQHGCL--LARYNDPR 361
+V +++V I AV FSG +E + ++E+ELR L D + + G +A+YN P
Sbjct: 231 SVKIQQVPRKIVAVVAFSGYVTDEEIERRERELRRALQNDKKFRVRDGVSFEVAQYNPPF 290
Query: 362 TQSFIMRNEVLIWLND 377
T F+ RNEV + + +
Sbjct: 291 TLPFMRRNEVSLEVEN 306
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,059,487
Number of extensions: 282986
Number of successful extensions: 637
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 631
Number of HSP's successfully gapped: 3
Length of query: 381
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 281
Effective length of database: 8,364,969
Effective search space: 2350556289
Effective search space used: 2350556289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)