Os06g0597600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Aromatic-ring hydroxylase family protein.
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Os06g0597600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Aromatic-ring hydroxylase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 357.75 | 0.889 | 4.84 | -1.67 | 1.44 | 2.47 | -0.239 | -2.65 | -1.24 | 8.94 | 10.49 | 10 | -- | -- |
| 362.82 | 0.894 | 4.79 | -1.28 | 1.44 | 2.42 | -0.614 | -- | -1.13 | 8.95 | 10.49 | 10 | -- | -- |
| 357.73 | 0.888 | 4.84 | -1.68 | 1.43 | 2.49 | -- | -2.78 | -1.24 | 8.96 | 10.49 | 10 | -- | -- |
| 364.11 | 0.895 | 4.79 | -1.31 | 1.44 | 2.45 | -- | -- | -1.13 | 8.92 | 10.49 | 10 | -- | -- |
| 472.05 | 1.02 | 4.9 | -1.81 | -- | 2.93 | -- | -3.09 | -1.3 | -- | 10.49 | 10 | -- | -- |
| 419.19 | 0.96 | 4.71 | -0.818 | 1.69 | -- | -0.571 | -- | -0.792 | 10.5 | -- | -- | -- | -- |
| 420.53 | 0.96 | 4.71 | -0.841 | 1.7 | -- | -- | -- | -0.794 | 10.5 | -- | -- | -- | -- |
| 479.66 | 1.02 | 4.84 | -1.39 | -- | 2.85 | -- | -- | -1.18 | -- | 13.26 | 3 | -- | -- |
| 404.99 | 0.942 | 4.74 | -- | 1.48 | 1.81 | -- | -- | -0.913 | 9.44 | 10.49 | 10 | -- | -- |
| 596.99 | 1.14 | 4.76 | -0.87 | -- | -- | -- | -- | -0.801 | -- | -- | -- | -- | -- |
| 439.15 | 0.98 | 4.69 | -- | 1.7 | -- | -- | -- | -0.7 | 10.5 | -- | -- | -- | -- |
| 527.35 | 1.07 | 4.8 | -- | -- | 2.42 | -- | -- | -0.98 | -- | 9.352 | 2 | -- | -- |
| 616.97 | 1.16 | 4.74 | -- | -- | -- | -- | -- | -0.704 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 350.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 5 | 355.92 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 6 | 355.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 20 |
| 10 | 357.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 11 | 357.76 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 15 | 358.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 21 | 359.11 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 3 |
| 30 | 359.67 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 33 | 359.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 34 | 359.94 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 40 | 360.15 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 48 | 360.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 56 | 360.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 11 |
| 57 | 360.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 60 | 360.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 67 | 361.09 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 72 | 361.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 78 | 361.61 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 79 | 361.73 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 81 | 361.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 82 | 361.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 85 | 361.97 | humidity | 80 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 90 | 362.00 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 103 | 362.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 115 | 362.50 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 121 | 362.61 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 164 | 363.57 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 167 | 363.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 207 | 364.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 215 | 364.51 | humidity | 80 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 230 | 364.64 | temperature | 15 | 720 | > th | dose dependent | sin | 3 | NA |
| 235 | 364.70 | humidity | 80 | 14400 | < th | dose independent | rect. | 7 | 14 |
| 236 | 364.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 246 | 364.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 251 | 364.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 255 | 364.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 257 | 364.98 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 273 | 365.18 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 344 | 365.83 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 414 | 366.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 463 | 366.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 517 | 367.20 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 11 | 20 |
| 537 | 367.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 545 | 367.36 | humidity | 80 | 14400 | < th | dose independent | sin | 21 | NA |
| 552 | 367.40 | humidity | 70 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 570 | 367.48 | humidity | 70 | 14400 | > th | dose dependent | rect. | 9 | 14 |
| 627 | 367.71 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 630 | 367.73 | humidity | 70 | 14400 | > th | dose dependent | rect. | 11 | 12 |
| 634 | 367.75 | humidity | 80 | 14400 | > th | dose independent | sin | 21 | NA |
| 693 | 367.98 | humidity | 70 | 14400 | > th | dose dependent | rect. | 9 | 3 |
| 711 | 368.05 | humidity | 70 | 14400 | > th | dose dependent | sin | 19 | NA |
| 733 | 368.12 | humidity | 70 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 750 | 368.18 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 785 | 368.25 | humidity | 70 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 825 | 368.39 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 868 | 368.53 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 874 | 368.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 894 | 368.61 | radiation | 1 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 899 | 368.62 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 971 | 368.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 4 |