BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0597600 Os06g0597600|AK120804
         (431 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0597600  Aromatic-ring hydroxylase family protein            746   0.0  

>Os06g0597600 Aromatic-ring hydroxylase family protein
          Length = 431

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/378 (96%), Positives = 366/378 (96%)

Query: 54  QSMETLARWIPGRLDAATLPLAVDLNRATDGETKAGRTLTRDEGFGFRAAHWGDLHRRLH 113
           QSMETLARWIPGRLDAATLPLAVDLNRATDGETKAGRTLTRDEGFGFRAAHWGDLHRRLH
Sbjct: 54  QSMETLARWIPGRLDAATLPLAVDLNRATDGETKAGRTLTRDEGFGFRAAHWGDLHRRLH 113

Query: 114 EALPAGVTVLWGHQFVSFEMAPEGDGDGGVVVTARVLRTGETVEVAGDLLVAADGCTSAI 173
           EALPAGVTVLWGHQFVSFEMAPEGDGDGGVVVTARVLRTGETVEVAGDLLVAADGCTSAI
Sbjct: 114 EALPAGVTVLWGHQFVSFEMAPEGDGDGGVVVTARVLRTGETVEVAGDLLVAADGCTSAI 173

Query: 174 RRRFLPELKLRYSGYCAWRGVFDFSGKEGCTTMVDIRRAYPELGNCLYFDLAYKTHAVLY 233
           RRRFLPELKLRYSGYCAWRGVFDFSGKEGCTTMVDIRRAYPELGNCLYFDLAYKTHAVLY
Sbjct: 174 RRRFLPELKLRYSGYCAWRGVFDFSGKEGCTTMVDIRRAYPELGNCLYFDLAYKTHAVLY 233

Query: 234 ELPKNRLNWLWYINGDEPELMGSSVTMKVNEATVSEMKEEAERVWCPELARLIGETAEPF 293
           ELPKNRLNWLWYINGDEPELMGSSVTMKVNEATVSEMKEEAERVWCPELARLIGETAEPF
Sbjct: 234 ELPKNRLNWLWYINGDEPELMGSSVTMKVNEATVSEMKEEAERVWCPELARLIGETAEPF 293

Query: 294 VNVIYDAEPLPGLSWAGGRVALVGDAAHPTTPHGLRSTNMSILDARVLGCCLARWGGDGN 353
           VNVIYDAEPLPGLSWAGGRVALVGDAAHPTTPHGLRSTNMSILDARVLGCCLARWGGDGN
Sbjct: 294 VNVIYDAEPLPGLSWAGGRVALVGDAAHPTTPHGLRSTNMSILDARVLGCCLARWGGDGN 353

Query: 354 AEPTSTPXXXXXXXXXXXXPVVAAQVLHARRLGRLKQGLGMGSAGDGEGFDARTATEEEI 413
           AEPTSTP            PVVAAQVLHARRLGRLKQGLGMGSAGDGEGFDARTATEEEI
Sbjct: 354 AEPTSTPRRALAEYEAARRPVVAAQVLHARRLGRLKQGLGMGSAGDGEGFDARTATEEEI 413

Query: 414 SQLRQSSMPYFSGAPTIE 431
           SQLRQSSMPYFSGAPTIE
Sbjct: 414 SQLRQSSMPYFSGAPTIE 431



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,084,285
Number of extensions: 647725
Number of successful extensions: 1779
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1779
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 327
Effective length of database: 11,605,545
Effective search space: 3795013215
Effective search space used: 3795013215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)