BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0597600 Os06g0597600|AK120804
         (431 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11330.1  | chr5:3617342-3618861 REVERSE LENGTH=409            395   e-110
AT5G67030.1  | chr5:26753745-26757090 REVERSE LENGTH=668           59   6e-09

>AT5G11330.1 | chr5:3617342-3618861 REVERSE LENGTH=409
          Length = 408

 Score =  395 bits (1016), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/379 (51%), Positives = 252/379 (66%), Gaps = 27/379 (7%)

Query: 54  QSMETLARWI--PGRLDAATLPLAVDLNRATDGETKAGRTLTRDEGFGFRAAHWGDLHRR 111
           Q+ + +  W+  P  LD  TLPL++D N+ TD E K  R LTRDE F FRAA+W D+   
Sbjct: 55  QARQIIKSWLTTPQLLDEITLPLSIDQNQTTDSEKKVTRILTRDEDFDFRAAYWSDIQSL 114

Query: 112 LHEALPAGVTVLWGHQFVSFEMAPEGDGDGGVVVTARVLRTGETVEVAGDLLVAADGCTS 171
           L+ ALP  +  LWGH+F+SF M+ +   +  V V   V+ T ETVE+ GDLL+AADGC S
Sbjct: 115 LYNALPQTM-FLWGHKFLSFTMSQD---ESNVKVKTLVVETQETVEIEGDLLIAADGCLS 170

Query: 172 AIRRRFLPELKLRYSGYCAWRGVFDFSGKEGCTTMVDIRRAYPELGNCLYFDLAYKTHAV 231
           +IR+ FLP+ KLRYSGYCAWRGVFDFSG E   T+  I++ YP+LG CLYFDL  +TH+V
Sbjct: 171 SIRKTFLPDFKLRYSGYCAWRGVFDFSGNENSETVSGIKKVYPDLGKCLYFDLGEQTHSV 230

Query: 232 LYELPKNRLNWLWYINGDEPELMGSSVTMKVNEATVSEMKEEAERVWCPELARLIGETAE 291
            YEL   +LNW+WY+N  EP+L  +SVT+KV++  +++M +EAE +W PELARL+ ET +
Sbjct: 231 FYELFNKKLNWIWYVNQPEPDLKSNSVTLKVSQEMINKMHQEAETIWIPELARLMSETKD 290

Query: 292 PFVNVIYDAEPLPGLSWAGGRVALVGDAAHPTTPHGLRSTNMSILDARVLGCCLARWGGD 351
           PF+NVIYD++PL  + W  G + LVGDAAHPTTPHGLRSTNMSILDA VLG CL   G +
Sbjct: 291 PFLNVIYDSDPLERIFW--GNIVLVGDAAHPTTPHGLRSTNMSILDAEVLGKCLENCGPE 348

Query: 352 GNAEPTSTPXXXXXXXXXXXXPVVAAQVLHARRLGRLKQGLGMGSAGDGEGFDARTATEE 411
             +                  PVV+ QVL+ARRLGR+KQGL     GDG           
Sbjct: 349 NVS-------LGLEEYQRIRLPVVSEQVLYARRLGRIKQGLDHDGIGDG----------- 390

Query: 412 EISQLRQSSMPYFSGAPTI 430
            +  L Q +MP+FS AP I
Sbjct: 391 -VFGLEQRNMPFFSCAPLI 408



>AT5G67030.1 | chr5:26753745-26757090 REVERSE LENGTH=668
          Length = 667

 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 90/208 (43%), Gaps = 28/208 (13%)

Query: 140 DGGVVVTARVLRTGETVEVAGDLLVAADGCTSAIRRRFLPELKLRYSGYCAWRGVFDFSG 199
           D G  VT  VL  G+  E  GDLLV ADG  S +R       +  YSGY  + G+ DF  
Sbjct: 219 DSGDKVTV-VLENGQRYE--GDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADF-- 273

Query: 200 KEGCTTMVDIRRAYPELGNCLYFDLAYKTHAVLYELPKNRLNWLWYINGDEPELMGSSVT 259
                    I      +G  ++  L +K + V  ++   ++   WY   +EP   G +  
Sbjct: 274 ---------IPADIESVGYRVF--LGHKQYFVSSDVGGGKMQ--WYAFHEEP--AGGADA 318

Query: 260 MKVNEATVSEMKEEAERVWCPELARLIGETAEPFV--NVIYDAEPLPGLSWAGGRVALVG 317
               +  + E+ +     WC  +  L+  T E  +    IYD    PG +W  GRV L+G
Sbjct: 319 PNGMKKRLFEIFDG----WCDNVLDLLHATEEEAILRRDIYDRS--PGFTWGKGRVTLLG 372

Query: 318 DAAHPTTPHGLRSTNMSILDARVLGCCL 345
           D+ H   P+  +   M+I D+  L   L
Sbjct: 373 DSIHAMQPNMGQGGCMAIEDSFQLALEL 400



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,278,423
Number of extensions: 348761
Number of successful extensions: 689
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 683
Number of HSP's successfully gapped: 2
Length of query: 431
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 330
Effective length of database: 8,337,553
Effective search space: 2751392490
Effective search space used: 2751392490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)