Os06g0506000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0506000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.4 | 0.424 | 9.1 | -1.52 | 1.16 | 1.19 | -0.429 | -1.22 | -0.684 | 3.26 | 21.28 | 1515 | -- | -- |
| 82.45 | 0.423 | 9.06 | -1.17 | 1.16 | 1.16 | -0.448 | -- | -0.59 | 3.23 | 20.2 | 1506 | -- | -- |
| 81.98 | 0.422 | 9.1 | -1.51 | 1.17 | 1.19 | -- | -1.23 | -0.682 | 3.27 | 21.2 | 1529 | -- | -- |
| 83.07 | 0.425 | 9.05 | -1.16 | 1.17 | 1.16 | -- | -- | -0.588 | 3.26 | 20.16 | 1529 | -- | -- |
| 148.24 | 0.567 | 9.07 | -1.37 | -- | 1.42 | -- | -0.426 | -0.652 | -- | 20 | 2600 | -- | -- |
| 125.28 | 0.525 | 8.99 | -0.729 | 1.21 | -- | -0.369 | -- | -0.312 | 3.19 | -- | -- | -- | -- |
| 125.72 | 0.525 | 8.99 | -0.721 | 1.2 | -- | -- | -- | -0.31 | 3.2 | -- | -- | -- | -- |
| 142.69 | 0.556 | 9.06 | -1.22 | -- | 1.5 | -- | -- | -0.62 | -- | 19.58 | 1175 | -- | -- |
| 114.86 | 0.499 | 9.02 | -- | 1.21 | 0.994 | -- | -- | -0.419 | 3.38 | 21.8 | 1773 | -- | -- |
| 208.07 | 0.674 | 8.99 | -0.67 | -- | -- | -- | -- | -0.279 | -- | -- | -- | -- | -- |
| 139.43 | 0.552 | 8.97 | -- | 1.19 | -- | -- | -- | -0.23 | 3.2 | -- | -- | -- | -- |
| 174.06 | 0.614 | 9.02 | -- | -- | 1.12 | -- | -- | -0.398 | -- | 22.3 | 1177 | -- | -- |
| 219.91 | 0.692 | 8.97 | -- | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 2 | 78.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 14 | 79.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 17 |
| 16 | 79.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 44 | 79.83 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 113 | 80.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 214 | 81.80 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 228 | 81.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 229 | 81.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 244 | 81.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 307 | 82.07 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 471 | 82.73 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 3 |
| 500 | 82.79 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 553 | 83.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 562 | 83.03 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 591 | 83.11 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 596 | 83.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 668 | 83.37 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 669 | 83.38 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 671 | 83.39 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 676 | 83.40 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 6 |
| 691 | 83.44 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 713 | 83.50 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |