BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0506000 Os06g0506000|AK108056
(263 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0506000 Conserved hypothetical protein 470 e-133
Os01g0224200 Conserved hypothetical protein 116 2e-26
>Os06g0506000 Conserved hypothetical protein
Length = 263
Score = 470 bits (1209), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/263 (88%), Positives = 234/263 (88%)
Query: 1 MRLPASSSSAAGLQERIWDLHDNXXXXXXXXXXXXXXXXXXXAPEGRVVVKGWRRQGGCG 60
MRLPASSSSAAGLQERIWDLHDN APEGRVVVKGWRRQGGCG
Sbjct: 1 MRLPASSSSAAGLQERIWDLHDNLSHAILSLSASAHRCCRRRAPEGRVVVKGWRRQGGCG 60
Query: 61 DCGLEQEXXXXXXXXXXRSLHAVRAALEDLEGHLHFLHNIQLCQVAERDAAIARLQQSRI 120
DCGLEQE RSLHAVRAALEDLEGHLHFLHNIQLCQVAERDAAIARLQQSRI
Sbjct: 61 DCGLEQEAAAAATMADARSLHAVRAALEDLEGHLHFLHNIQLCQVAERDAAIARLQQSRI 120
Query: 121 LLATRLAEHRWKKHEVIEEALAFVDDALDKSRFVSPEDVRGTHTHSQSVENQCPKIHDSN 180
LLATRLAEHRWKKHEVIEEALAFVDDALDKSRFVSPEDVRGTHTHSQSVENQCPKIHDSN
Sbjct: 121 LLATRLAEHRWKKHEVIEEALAFVDDALDKSRFVSPEDVRGTHTHSQSVENQCPKIHDSN 180
Query: 181 FLVRFLSCTLAIAKNSLRFERIGGALGNTAMFAVSMLAFLQLQQVAFGKQTPAVQCRRVN 240
FLVRFLSCTLAIAKNSLRFERIGGALGNTAMFAVSMLAFLQLQQVAFGKQTPAVQCRRVN
Sbjct: 181 FLVRFLSCTLAIAKNSLRFERIGGALGNTAMFAVSMLAFLQLQQVAFGKQTPAVQCRRVN 240
Query: 241 YFHSQMSVKNTKEKHLVVLLARG 263
YFHSQMSVKNTKEKHLVVLLARG
Sbjct: 241 YFHSQMSVKNTKEKHLVVLLARG 263
>Os01g0224200 Conserved hypothetical protein
Length = 260
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 122/244 (50%), Gaps = 22/244 (9%)
Query: 10 AAGLQERIWDLHDNXXXXXXXXXXX---XXXXXXXXAPEGRVVVKGWRRQGGCGDCGLEQ 66
A + E IWDLHD EG V VKG GD ++
Sbjct: 6 AEAVLETIWDLHDKVSDAIHALSRAHFLRAVRRHSKPAEGLVRVKG-------GDGVDDE 58
Query: 67 EXXXXXXXXXXRSLHAVRAALEDLEGHLHFLHNIQLCQVAERDAAIARLQQSRILLATRL 126
RSLHA+RAALEDLE +Q Q AERD ++ARL+QSRI+LA RL
Sbjct: 59 AAALDAVAEEARSLHAIRAALEDLEDQFECFLAVQSQQQAERDISLARLEQSRIMLAIRL 118
Query: 127 AEHRWKKHEVIEEALAFVDD---ALDKSRFVSPEDVRGTHTHSQSVENQCPKIHDSNFLV 183
HR ++I+EAL FV + + S ++ G+H+ + S ++NFL
Sbjct: 119 NGHRGVNKKIIDEALDFVRNVCHGVWPSLSINKPAKLGSHSGADS--------KNANFLG 170
Query: 184 RFLSCTLAIAKNSLRFERIGGALGNTAMFAVSMLAFLQLQQVAFGKQTPAVQCRRVNYFH 243
+ ++ ++A+A+NS + +GG LG+T + A+ M+ LQL ++ G+Q+P+ CR
Sbjct: 171 QMVASSVALARNSFSIKTLGGLLGHTGVLAIGMITLLQLHWLSSGQQSPST-CRYSYKMI 229
Query: 244 SQMS 247
SQ S
Sbjct: 230 SQES 233
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,653,097
Number of extensions: 252417
Number of successful extensions: 537
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 532
Number of HSP's successfully gapped: 3
Length of query: 263
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 164
Effective length of database: 11,866,615
Effective search space: 1946124860
Effective search space used: 1946124860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 155 (64.3 bits)