BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0506000 Os06g0506000|AK108056
         (263 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53280.1  | chr5:21607586-21609080 FORWARD LENGTH=273          137   6e-33

>AT5G53280.1 | chr5:21607586-21609080 FORWARD LENGTH=273
          Length = 272

 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/268 (34%), Positives = 130/268 (48%), Gaps = 28/268 (10%)

Query: 15  ERIWDLHDNXXXXXXXXXXXXXXXXXXXAPEGRVVVKGWRRQGGCGDCGLEQE------- 67
           E+IWDLHD                     P  R      +R+   G+ G ++        
Sbjct: 14  EKIWDLHDKLSDEIHLISKSHFLKSVK--PSNR----SEKRKNPHGNSGEDKRPGYVFIK 67

Query: 68  ----XXXXXXXXXXRSLHAVRAALEDLEGHLHFLHNIQLCQVAERDAAIARLQQSRILLA 123
                         +SL+A+R ALE+LE  L F H I   Q  E+D AIARL+QSRILLA
Sbjct: 68  GFAVDDNDSTIQEAKSLNAIRTALENLEDQLEFFHTIHTQQRTEKDVAIARLEQSRILLA 127

Query: 124 TRLAEHRWKKHEVIEEALAFVDDALDKSRFVSPEDVRGTHTHSQSVENQCPKIHDSNFLV 183
            RLAEH  K + V+EEALAFV      S +VSP+ +  +  +     N  P   +SNF++
Sbjct: 128 MRLAEHHGKNYGVLEEALAFVGSIKSNSHYVSPDHLYDSSRNPDGA-NSIPDGIESNFVI 186

Query: 184 RFLSCTLAIAKNSLRFERIGGALGNTAMFAVSMLAFLQLQQVAFGKQTPAVQCRRVNYFH 243
              + T   AK +L F  + G LGN A+FA+S++A L L QVA  +    +Q +   ++ 
Sbjct: 187 NAFASTFGFAKRALGFNHVKGVLGNAAIFAISVVAMLHLHQVATSEHH--LQKKEDRFYR 244

Query: 244 SQMSVKNTKEK--------HLVVLLARG 263
           SQ      ++K        HL V++ARG
Sbjct: 245 SQQRKTYGRDKSSADRSLDHLDVMMARG 272



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,698,505
Number of extensions: 151966
Number of successful extensions: 337
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 166
Effective length of database: 8,447,217
Effective search space: 1402238022
Effective search space used: 1402238022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)