Os06g0472400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcriptional regulator.
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Os06g0472400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcriptional regulator.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.99 | 0.367 | 6.91 | -1.04 | 0.329 | -1.67 | -0.584 | 6.98 | -0.18 | 2.65 | 1000 | 109 | -- | -- |
| 62.09 | 0.37 | 6.82 | -0.568 | 0.336 | -0.406 | -0.56 | -- | -0.182 | 2.63 | 1000 | 109 | -- | -- |
| 62.17 | 0.367 | 6.91 | -1.04 | 0.33 | -1.69 | -- | 7.05 | -0.179 | 2.9 | 1000 | 109 | -- | -- |
| 62.73 | 0.369 | 6.82 | -0.561 | 0.338 | -0.446 | -- | -- | -0.176 | 2.88 | 1000 | 177 | -- | -- |
| 68.42 | 0.385 | 6.9 | -1.02 | -- | -1.71 | -- | 7.21 | -0.17 | -- | 1000 | 152 | -- | -- |
| 66.74 | 0.383 | 6.83 | -0.494 | 0.325 | -- | -0.593 | -- | -0.21 | 2.6 | -- | -- | -- | -- |
| 67.96 | 0.386 | 6.83 | -0.479 | 0.325 | -- | -- | -- | -0.207 | 2.83 | -- | -- | -- | -- |
| 69.23 | 0.388 | 6.82 | -0.541 | -- | -0.439 | -- | -- | -0.175 | -- | 1000 | 176 | -- | -- |
| 70.62 | 0.391 | 6.81 | -- | 0.327 | -0.315 | -- | -- | -0.112 | 2.88 | 1002 | 138 | -- | -- |
| 74.09 | 0.402 | 6.82 | -0.466 | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
| 74.02 | 0.402 | 6.81 | -- | 0.316 | -- | -- | -- | -0.153 | 2.82 | -- | -- | -- | -- |
| 76.68 | 0.408 | 6.81 | -- | -- | -0.349 | -- | -- | -0.123 | -- | 1001 | 379 | -- | -- |
| 79.81 | 0.417 | 6.81 | -- | -- | -- | -- | -- | -0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.55 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 12 | 57.97 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 19 | 58.03 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 54 | 58.42 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 67 | 58.48 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 6 |
| 75 | 58.52 | wind | 9 | 14400 | > th | dose independent | sin | 3 | NA |
| 96 | 58.56 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 99 | 58.57 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 104 | 58.59 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 122 | 58.64 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 14 |
| 129 | 58.66 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 16 |
| 141 | 58.69 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 6 |
| 148 | 58.70 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 150 | 58.70 | wind | 9 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 200 | 58.78 | wind | 9 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 210 | 58.81 | wind | 9 | 14400 | < th | dose independent | sin | 4 | NA |
| 218 | 58.82 | wind | 9 | 14400 | > th | dose dependent | sin | 3 | NA |
| 276 | 58.97 | humidity | 80 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 333 | 59.13 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 341 | 59.16 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 426 | 59.40 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 8 | 23 |
| 438 | 59.47 | wind | 9 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 488 | 59.60 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 9 | 22 |
| 499 | 59.61 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 8 | 20 |
| 707 | 60.16 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 740 | 60.29 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 741 | 60.30 | radiation | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 766 | 60.34 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 7 | 14 |
| 802 | 60.41 | wind | 9 | 14400 | > th | dose independent | no | NA | NA |
| 805 | 60.41 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 21 |
| 848 | 60.43 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 12 | 11 |
| 850 | 60.44 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 898 | 60.48 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 901 | 60.49 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 9 | 10 |
| 910 | 60.52 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 944 | 60.63 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 981 | 60.70 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 12 | 4 |
| 990 | 60.73 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 9 | 18 |
| 999 | 60.74 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 7 | 14 |