BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0472400 Os06g0472400|AK067008
         (743 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66420.2  | chr5:26521893-26524986 REVERSE LENGTH=755          886   0.0  

>AT5G66420.2 | chr5:26521893-26524986 REVERSE LENGTH=755
          Length = 754

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/753 (63%), Positives = 564/753 (74%), Gaps = 18/753 (2%)

Query: 3   LLCIGTADTKLDEXXXXXXXXXX---XXXXXXXXQVQVSLVDVST---TKKVTS-QDFKG 55
           + C+GTADTKLDE                     +V+V +VDVS     K++ +  DF  
Sbjct: 8   VFCVGTADTKLDELRFLAGSVRSNIGAFSKNSSSKVEVVIVDVSAGADQKQIDNVADF-- 65

Query: 56  TTFISRDAVLSCHLGVDQHE----LPSDRGEAITLMSEALQSFLKRRYEXXXXXXXXXXX 111
             F++R+ VLSC++G +Q E    LP DRGEA+ +MS+ L++FL++ +E           
Sbjct: 66  -AFVTREEVLSCYIGSNQEEKPVKLPDDRGEAVGVMSKCLENFLRQAFEDNSLAGAIGLG 124

Query: 112 XXXXXXXIAPALRSLPLGVPKLIVSTVASGQTAPYVGTSDLVLFPSVVDICGINSVSRVI 171
                  I+ A RSLP+G+PK+IVSTVASGQT PYVGTSDLVL PS+VD+CGINSVSRV+
Sbjct: 125 GSGGTSLISSAFRSLPIGIPKVIVSTVASGQTEPYVGTSDLVLIPSLVDVCGINSVSRVV 184

Query: 172 LSNAAAAVAGMVHGILMESNESDETATKPTIGITMFGVTTTCVNMVKERLSKEGYETLVF 231
            SNA A+ AGMV G L     S     K T+GITMFGVTT CVN V+E L++EGYETLVF
Sbjct: 185 FSNAGASFAGMVVGRLELFRSSPSDNGKCTVGITMFGVTTPCVNAVQEILTREGYETLVF 244

Query: 232 HATGVGGKAMEELVKGGFIQGVLDITTTEVADHIVGGVMACDDTRFDAIIDNKIPLVLSV 291
           HATGVGG+AME LVK GFIQGV+DITTTEVADH+VGGVMACD +RFD  I+  IPLVLSV
Sbjct: 245 HATGVGGRAMESLVKEGFIQGVMDITTTEVADHLVGGVMACDSSRFDITIEKGIPLVLSV 304

Query: 292 GALDMVNFGARDTIPPDFTGRKIHVHNEQVSLMRTTVEENKKIAEFIADKINKSSSKVIV 351
           GALDMVNFG +DTIP  F  RKIHVHNEQVSL+RTT EENKK A FIADK+NKS+SKV V
Sbjct: 305 GALDMVNFGGKDTIPSHFQTRKIHVHNEQVSLIRTTAEENKKFARFIADKLNKSTSKVRV 364

Query: 352 CLPQKGISAIDAPKMPFYDLEATSTLLDELCSRIEKTDNREVKMLPYHINDPEFANVLVD 411
           C+P+KG+SA+DAP  PF D EAT  L++EL   I+  D+R+V +  +HINDPEFA  LV 
Sbjct: 365 CIPEKGLSALDAPGKPFCDPEATGALINELQGLIQTNDDRQVNIYSHHINDPEFAEALVA 424

Query: 412 AFLSMDVKASNTISPENSMVQTNQDVNTKEYCSTQRTSDSSIIWRSPVDFPDARPETLQK 471
           +FL +  K    I P  +   T+   +T E+      S    I  SP +FP+A+PETL++
Sbjct: 425 SFLEICPKTYAQIKPSET---TSTKPSTGEHDDGHVRSRLERIPYSPKEFPNAKPETLER 481

Query: 472 TKSVLHKLKQQIVEGTPVIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLL 531
           T+++L +L+ QI +G P+IG GAGTGISAKFEEAGG+DLIV+YNSGRFRMAGRGSLAGLL
Sbjct: 482 TQAILGRLRDQIEKGIPIIGGGAGTGISAKFEEAGGIDLIVIYNSGRFRMAGRGSLAGLL 541

Query: 532 PFADANAIVLEMANEVLPVVKGVPVLAGVCATDPFRRMEYFLKQLEAIGFCGVQNFPTVG 591
           PFADANA+VLEMANEVLPVVK VPVLAGVCATDPFRRM+YFLKQLE+IGF GVQNFPTVG
Sbjct: 542 PFADANAVVLEMANEVLPVVKAVPVLAGVCATDPFRRMDYFLKQLESIGFVGVQNFPTVG 601

Query: 592 LFDGNFRQNLEETGMGYSLEVEMISRAHSMGFLTTPYXXXXXXXXXXXXXXXXXXXXHMG 651
           LFDGNFRQNLEETGMGY LEV+MIS AH MG LTTPY                    HMG
Sbjct: 602 LFDGNFRQNLEETGMGYGLEVKMISEAHKMGLLTTPYAFNPKEGEEMAKAGADIIVAHMG 661

Query: 652 LTTAGSIGAKTAVTLDDSVKRVQAIADAALGINPDIIVLCHGGPISGPQEAEFILKRTNR 711
           LTT+G+IGAKTAV++++SV RVQAIADAA   NPDIIVLCHGGPISGP+EAEF+LKRT  
Sbjct: 662 LTTSGNIGAKTAVSVEESVVRVQAIADAARRFNPDIIVLCHGGPISGPEEAEFVLKRTQG 721

Query: 712 -VHGFYGASSMERLPVEQAITNTMREYKRISIK 743
            VHGFYGASSMERLPVEQAITNT+++YK ISIK
Sbjct: 722 CVHGFYGASSMERLPVEQAITNTVQKYKSISIK 754



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,924,177
Number of extensions: 562669
Number of successful extensions: 1452
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1445
Number of HSP's successfully gapped: 1
Length of query: 743
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 637
Effective length of database: 8,200,473
Effective search space: 5223701301
Effective search space used: 5223701301
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)