BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0472400 Os06g0472400|AK067008
         (743 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0472400  Similar to Transcriptional regulator               1394   0.0  

>Os06g0472400 Similar to Transcriptional regulator
          Length = 743

 Score = 1394 bits (3608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/743 (92%), Positives = 687/743 (92%)

Query: 1   MELLCIGTADTKLDEXXXXXXXXXXXXXXXXXXQVQVSLVDVSTTKKVTSQDFKGTTFIS 60
           MELLCIGTADTKLDE                  QVQVSLVDVSTTKKVTSQDFKGTTFIS
Sbjct: 1   MELLCIGTADTKLDELLFLAARLRSTLAATSSAQVQVSLVDVSTTKKVTSQDFKGTTFIS 60

Query: 61  RDAVLSCHLGVDQHELPSDRGEAITLMSEALQSFLKRRYEXXXXXXXXXXXXXXXXXXIA 120
           RDAVLSCHLGVDQHELPSDRGEAITLMSEALQSFLKRRYE                  IA
Sbjct: 61  RDAVLSCHLGVDQHELPSDRGEAITLMSEALQSFLKRRYESGTLLGAVGLGGSGGTALIA 120

Query: 121 PALRSLPLGVPKLIVSTVASGQTAPYVGTSDLVLFPSVVDICGINSVSRVILSNAAAAVA 180
           PALRSLPLGVPKLIVSTVASGQTAPYVGTSDLVLFPSVVDICGINSVSRVILSNAAAAVA
Sbjct: 121 PALRSLPLGVPKLIVSTVASGQTAPYVGTSDLVLFPSVVDICGINSVSRVILSNAAAAVA 180

Query: 181 GMVHGILMESNESDETATKPTIGITMFGVTTTCVNMVKERLSKEGYETLVFHATGVGGKA 240
           GMVHGILMESNESDETATKPTIGITMFGVTTTCVNMVKERLSKEGYETLVFHATGVGGKA
Sbjct: 181 GMVHGILMESNESDETATKPTIGITMFGVTTTCVNMVKERLSKEGYETLVFHATGVGGKA 240

Query: 241 MEELVKGGFIQGVLDITTTEVADHIVGGVMACDDTRFDAIIDNKIPLVLSVGALDMVNFG 300
           MEELVKGGFIQGVLDITTTEVADHIVGGVMACDDTRFDAIIDNKIPLVLSVGALDMVNFG
Sbjct: 241 MEELVKGGFIQGVLDITTTEVADHIVGGVMACDDTRFDAIIDNKIPLVLSVGALDMVNFG 300

Query: 301 ARDTIPPDFTGRKIHVHNEQVSLMRTTVEENKKIAEFIADKINKSSSKVIVCLPQKGISA 360
           ARDTIPPDFTGRKIHVHNEQVSLMRTTVEENKKIAEFIADKINKSSSKVIVCLPQKGISA
Sbjct: 301 ARDTIPPDFTGRKIHVHNEQVSLMRTTVEENKKIAEFIADKINKSSSKVIVCLPQKGISA 360

Query: 361 IDAPKMPFYDLEATSTLLDELCSRIEKTDNREVKMLPYHINDPEFANVLVDAFLSMDVKA 420
           IDAPKMPFYDLEATSTLLDELCSRIEKTDNREVKMLPYHINDPEFANVLVDAFLSMDVKA
Sbjct: 361 IDAPKMPFYDLEATSTLLDELCSRIEKTDNREVKMLPYHINDPEFANVLVDAFLSMDVKA 420

Query: 421 SNTISPENSMVQTNQDVNTKEYCSTQRTSDSSIIWRSPVDFPDARPETLQKTKSVLHKLK 480
           SNTISPENSMVQTNQDVNTKEYCSTQRTSDSSIIWRSPVDFPDARPETLQKTKSVLHKLK
Sbjct: 421 SNTISPENSMVQTNQDVNTKEYCSTQRTSDSSIIWRSPVDFPDARPETLQKTKSVLHKLK 480

Query: 481 QQIVEGTPVIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAIV 540
           QQIVEGTPVIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAIV
Sbjct: 481 QQIVEGTPVIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAIV 540

Query: 541 LEMANEVLPVVKGVPVLAGVCATDPFRRMEYFLKQLEAIGFCGVQNFPTVGLFDGNFRQN 600
           LEMANEVLPVVKGVPVLAGVCATDPFRRMEYFLKQLEAIGFCGVQNFPTVGLFDGNFRQN
Sbjct: 541 LEMANEVLPVVKGVPVLAGVCATDPFRRMEYFLKQLEAIGFCGVQNFPTVGLFDGNFRQN 600

Query: 601 LEETGMGYSLEVEMISRAHSMGFLTTPYXXXXXXXXXXXXXXXXXXXXHMGLTTAGSIGA 660
           LEETGMGYSLEVEMISRAHSMGFLTTPY                    HMGLTTAGSIGA
Sbjct: 601 LEETGMGYSLEVEMISRAHSMGFLTTPYAFNPEEAAAMAKAGAHIIVAHMGLTTAGSIGA 660

Query: 661 KTAVTLDDSVKRVQAIADAALGINPDIIVLCHGGPISGPQEAEFILKRTNRVHGFYGASS 720
           KTAVTLDDSVKRVQAIADAALGINPDIIVLCHGGPISGPQEAEFILKRTNRVHGFYGASS
Sbjct: 661 KTAVTLDDSVKRVQAIADAALGINPDIIVLCHGGPISGPQEAEFILKRTNRVHGFYGASS 720

Query: 721 MERLPVEQAITNTMREYKRISIK 743
           MERLPVEQAITNTMREYKRISIK
Sbjct: 721 MERLPVEQAITNTMREYKRISIK 743



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,621,187
Number of extensions: 877612
Number of successful extensions: 2249
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2246
Number of HSP's successfully gapped: 1
Length of query: 743
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 635
Effective length of database: 11,396,689
Effective search space: 7236897515
Effective search space used: 7236897515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)