Os06g0338900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleotidyl transferase domain containing protein.
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Os06g0338900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleotidyl transferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.01 | 0.182 | 10.4 | -0.122 | 0.311 | -0.42 | 0.525 | 0.27 | 0.0596 | 22.5 | 20.78 | 14 | -- | -- |
| 14.84 | 0.181 | 10.4 | -0.173 | 0.312 | -0.423 | 0.472 | -- | 0.0419 | 22.4 | 22.4 | 8 | -- | -- |
| 15.74 | 0.186 | 10.4 | -0.191 | 0.309 | -0.426 | -- | -0.00499 | 0.0411 | 22.3 | 22.6 | 11 | -- | -- |
| 15.73 | 0.186 | 10.4 | -0.19 | 0.309 | -0.434 | -- | -- | 0.0415 | 22.3 | 22.56 | 10 | -- | -- |
| 20.91 | 0.214 | 10.4 | -0.15 | -- | -0.59 | -- | 0.0247 | 0.0717 | -- | 21.59 | 9 | -- | -- |
| 17.57 | 0.196 | 10.4 | -0.253 | 0.41 | -- | 0.5 | -- | -0.0224 | 23.7 | -- | -- | -- | -- |
| 18.65 | 0.202 | 10.4 | -0.273 | 0.408 | -- | -- | -- | -0.0246 | 23.7 | -- | -- | -- | -- |
| 20.89 | 0.214 | 10.4 | -0.151 | -- | -0.594 | -- | -- | 0.073 | -- | 21.09 | 7 | -- | -- |
| 16.63 | 0.191 | 10.4 | -- | 0.299 | -0.493 | -- | -- | 0.0704 | 22 | 22.56 | 10 | -- | -- |
| 29.13 | 0.252 | 10.4 | -0.261 | -- | -- | -- | -- | -0.0195 | -- | -- | -- | -- | -- |
| 20.62 | 0.212 | 10.4 | -- | 0.405 | -- | -- | -- | 0.00585 | 23.7 | -- | -- | -- | -- |
| 21.43 | 0.216 | 10.4 | -- | -- | -0.618 | -- | -- | 0.0949 | -- | 21.04 | 2 | -- | -- |
| 30.93 | 0.26 | 10.4 | -- | -- | -- | -- | -- | 0.00946 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.45 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 14 |
| 3 | 14.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 4 | 14.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 52 | 14.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 54 | 14.98 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 18 |
| 59 | 14.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 65 | 15.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 67 | 15.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 77 | 15.03 | temperature | 25 | 10 | < th | dose independent | rect. | 8 | 8 |
| 92 | 15.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 96 | 15.05 | temperature | 25 | 10 | > th | dose independent | rect. | 23 | 20 |
| 102 | 15.06 | temperature | 25 | 10 | < th | dose independent | rect. | 8 | 6 |
| 110 | 15.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 115 | 15.07 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 20 |
| 123 | 15.08 | humidity | 90 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 132 | 15.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 134 | 15.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 144 | 15.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 155 | 15.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 187 | 15.15 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 201 | 15.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 216 | 15.18 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 236 | 15.19 | temperature | 25 | 10 | < th | dose independent | sin | 0 | NA |
| 262 | 15.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 274 | 15.22 | temperature | 25 | 10 | > th | dose independent | sin | 0 | NA |
| 280 | 15.22 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 289 | 15.23 | temperature | 25 | 10 | < th | dose independent | rect. | 6 | 10 |
| 302 | 15.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 10 |
| 316 | 15.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 318 | 15.25 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 327 | 15.25 | humidity | 90 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 338 | 15.26 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 21 |
| 392 | 15.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 414 | 15.30 | radiation | 1 | 30 | > th | dose independent | rect. | 12 | 21 |
| 416 | 15.30 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 5 |
| 483 | 15.32 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 487 | 15.33 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 504 | 15.33 | radiation | 10 | 4320 | > th | dose independent | rect. | 17 | 14 |
| 514 | 15.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 8 |
| 543 | 15.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 562 | 15.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 564 | 15.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 567 | 15.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 573 | 15.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 599 | 15.36 | temperature | 25 | 10 | > th | dose independent | rect. | 10 | 23 |
| 600 | 15.36 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 631 | 15.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 752 | 15.41 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 753 | 15.41 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 802 | 15.42 | temperature | 25 | 10 | < th | dose independent | rect. | 22 | 20 |
| 835 | 15.43 | radiation | 20 | 10 | < th | dose dependent | sin | 12 | NA |
| 836 | 15.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 873 | 15.44 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 878 | 15.44 | radiation | 1 | 30 | > th | dose independent | rect. | 14 | 19 |
| 882 | 15.44 | radiation | 1 | 30 | > th | dose independent | rect. | 10 | 23 |
| 883 | 15.44 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 931 | 15.45 | temperature | 25 | 10 | < th | dose independent | rect. | 20 | 22 |
| 967 | 15.46 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 976 | 15.46 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |