BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0338900 Os06g0338900|AK100837
         (455 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0338900  Nucleotidyl transferase domain containing protein   849   0.0  
Os02g0812400  Nucleotidyl transferase domain containing protein    69   5e-12

>Os06g0338900 Nucleotidyl transferase domain containing protein
          Length = 455

 Score =  849 bits (2193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/455 (92%), Positives = 422/455 (92%)

Query: 1   MDFQVVVLAGGTSEKLSPLVSKDVPKALLPVANRPVLSYVLDLLEASDLKDIIVVVEGQE 60
           MDFQVVVLAGGTSEKLSPLVSKDVPKALLPVANRPVLSYVLDLLEASDLKDIIVVVEGQE
Sbjct: 1   MDFQVVVLAGGTSEKLSPLVSKDVPKALLPVANRPVLSYVLDLLEASDLKDIIVVVEGQE 60

Query: 61  AARLVGAWASSAYLDRLLVEVVAVPEDIGTAGALRAISKRLTANDVLVISGDLVTDVLPG 120
           AARLVGAWASSAYLDRLLVEVVAVPEDIGTAGALRAISKRLTANDVLVISGDLVTDVLPG
Sbjct: 61  AARLVGAWASSAYLDRLLVEVVAVPEDIGTAGALRAISKRLTANDVLVISGDLVTDVLPG 120

Query: 121 AVAATHRRNGAAVTALLCSVPISGPXXXXXXXXXXXXXXPTRLNIVGLDITRQFLLHIVS 180
           AVAATHRRNGAAVTALLCSVPISGP              PTRLNIVGLDITRQFLLHIVS
Sbjct: 121 AVAATHRRNGAAVTALLCSVPISGPSDAASSGGKDKAKKPTRLNIVGLDITRQFLLHIVS 180

Query: 181 GTDVEKDVRVYKRKIRAVGEMEIRSDLMDAHLYAFKRTTLQNILEEKESYRSIRLEVLPY 240
           GTDVEKDVRVYKRKIRAVGEMEIRSDLMDAHLYAFKRTTLQNILEEKESYRSIRLEVLPY
Sbjct: 181 GTDVEKDVRVYKRKIRAVGEMEIRSDLMDAHLYAFKRTTLQNILEEKESYRSIRLEVLPY 240

Query: 241 LVRSQLKXXXXXXXXXXXXXXXXXXXPSNSHLQCLSQHRILAPSAFKKDLLSSGGTYRCC 300
           LVRSQLK                   PSNSHLQCLSQHRILAPSAFKKDLLSSGGTYRCC
Sbjct: 241 LVRSQLKSSSSGGEGTTVDETGDTTVPSNSHLQCLSQHRILAPSAFKKDLLSSGGTYRCC 300

Query: 301 VYIATKSKYCHRLNSIQAYCDINRDVVGDASHLSGYSFSAQNNIIHPTSVLGSKTTIGPQ 360
           VYIATKSKYCHRLNSIQAYCDINRDVVGDASHLSGYSFSAQNNIIHPTSVLGSKTTIGPQ
Sbjct: 301 VYIATKSKYCHRLNSIQAYCDINRDVVGDASHLSGYSFSAQNNIIHPTSVLGSKTTIGPQ 360

Query: 361 CMLAEGSQLGDKCSVKRSVIGRHCRIGSNVKIVNSVVMNHVVIEDGCHIQGSVICNNVQL 420
           CMLAEGSQLGDKCSVKRSVIGRHCRIGSNVKIVNSVVMNHVVIEDGCHIQGSVICNNVQL
Sbjct: 361 CMLAEGSQLGDKCSVKRSVIGRHCRIGSNVKIVNSVVMNHVVIEDGCHIQGSVICNNVQL 420

Query: 421 QERAVLKDCQVGAGYIVTASSEHKAESLSKKVERF 455
           QERAVLKDCQVGAGYIVTASSEHKAESLSKKVERF
Sbjct: 421 QERAVLKDCQVGAGYIVTASSEHKAESLSKKVERF 455



>Os02g0812400 Nucleotidyl transferase domain containing protein
          Length = 732

 Score = 69.3 bits (168), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 18/155 (11%)

Query: 306 KSKYCHRLNSIQAYCDINRDVVGDASHL---SGYSFSAQNNI------IHPTS--VLGSK 354
           +S Y  R+++ ++Y  +++D++   ++       SF  +  I      I+  S   L   
Sbjct: 281 RSSYAARIDNFRSYDTVSKDIIQRWTYPMVPDVLSFGDRQEIKLHRQGIYKASDVTLSHS 340

Query: 355 TTIGPQCMLAEGSQLGDKCSVKRSVIGRHCRIGSNVKIVNSVVMNHVVIEDGCHIQGSVI 414
             IG   ++  G+ +G+ C V  SVIG+ C IG NV I  S + ++V IEDGC +  S++
Sbjct: 341 AQIGANSVVGNGTSVGENCKVSNSVIGQGCNIGKNVLIHGSYIWDNVTIEDGCKVSNSLV 400

Query: 415 CNNVQLQERAVLK-------DCQVGAGYIVTASSE 442
           C+ V L   A+++         +VG   +V A S+
Sbjct: 401 CDGVHLGAGAIVEPGCILSFKVEVGKNVVVPAYSK 435



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,235,435
Number of extensions: 494632
Number of successful extensions: 1194
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1187
Number of HSP's successfully gapped: 2
Length of query: 455
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 351
Effective length of database: 11,605,545
Effective search space: 4073546295
Effective search space used: 4073546295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)