BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0338900 Os06g0338900|AK100837
(455 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G19485.1 | chr5:6573907-6576352 REVERSE LENGTH=457 541 e-154
AT2G34970.1 | chr2:14746340-14748532 FORWARD LENGTH=731 70 2e-12
AT4G18300.1 | chr4:10118852-10120981 FORWARD LENGTH=710 68 1e-11
AT3G02270.1 | chr3:448977-451007 REVERSE LENGTH=677 58 9e-09
>AT5G19485.1 | chr5:6573907-6576352 REVERSE LENGTH=457
Length = 456
Score = 541 bits (1393), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/456 (59%), Positives = 342/456 (75%), Gaps = 5/456 (1%)
Query: 1 MDFQVVVLAGGTSEKLSPLVSKDVPKALLPVANRPVLSYVLDLLEASDLKDIIVVVEGQE 60
MDFQVV+LAGG S L PLV+K+VPKALLPVANRPVLSYVLDLLE+S+LKD+IVVVEG++
Sbjct: 1 MDFQVVILAGGFSSYLVPLVAKEVPKALLPVANRPVLSYVLDLLESSNLKDLIVVVEGED 60
Query: 61 AARLVGAWASSAYLDRLLVEVVAVPEDIGTAGALRAISKRLTANDVLVISGDLVTDVLPG 120
AA VG W SSA +DRL VEV AV E++GTAGALRAI+ LTA D+L++SGD+V+D+ PG
Sbjct: 61 AALKVGGWISSACVDRLHVEVAAVAENVGTAGALRAIAHHLTAKDILIVSGDIVSDIPPG 120
Query: 121 AVAATHRRNGAAVTALLCSVPISGPXXXXXXXXXXXXXXPTRLNIVGLDITRQFLLHIVS 180
AVAATHRR+ AAVT +LC+ P+SGP P +I+GLD +QFLL+I
Sbjct: 121 AVAATHRRHDAAVTVMLCAQPVSGPSESGGSGGKDKTKKPACDDIIGLDSLKQFLLYIAK 180
Query: 181 GTDVEKDVRVYKRKIRAVGEMEIRSDLMDAHLYAFKRTTLQNILEEKESYRSIRLEVLPY 240
GT+++KD RV K + A G+MEIRSDLMD+H+YAFKR LQ +L++K ++RS++ +VLPY
Sbjct: 181 GTEIKKDTRVKKSILCAAGKMEIRSDLMDSHIYAFKRAVLQEVLDQKPAFRSLKQDVLPY 240
Query: 241 LVRSQLKXXXXXXXXXXXXXXXXXXXPSNSHL-----QCLSQHRILAPSAFKKDLLSSGG 295
LVR+QL+ + + Q LS + + + L +
Sbjct: 241 LVRTQLRSDVFSDQSNVEENGNGNGKNNMQNNEVVLSQILSNASMPSFHQVYESGLGTRK 300
Query: 296 TYRCCVYIATKSKYCHRLNSIQAYCDINRDVVGDASHLSGYSFSAQNNIIHPTSVLGSKT 355
T++CCVYIA +SKY RLNSIQA+ D+NRDV+G+++HLSGYSFSA +NI+HP++ LGSKT
Sbjct: 301 THKCCVYIADESKYFVRLNSIQAFMDVNRDVIGESNHLSGYSFSAHHNIVHPSAELGSKT 360
Query: 356 TIGPQCMLAEGSQLGDKCSVKRSVIGRHCRIGSNVKIVNSVVMNHVVIEDGCHIQGSVIC 415
T+GP CML EGSQ+GDKCSVKRSVIGRHCRIGSNVKIVNSVVM+H I DGC IQGSVIC
Sbjct: 361 TVGPHCMLGEGSQVGDKCSVKRSVIGRHCRIGSNVKIVNSVVMDHATIGDGCSIQGSVIC 420
Query: 416 NNVQLQERAVLKDCQVGAGYIVTASSEHKAESLSKK 451
+N QLQER L+DCQV AGY+V A SEHK E+ ++K
Sbjct: 421 SNAQLQERVTLRDCQVEAGYVVCAGSEHKGETFARK 456
>AT2G34970.1 | chr2:14746340-14748532 FORWARD LENGTH=731
Length = 730
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 84/153 (54%), Gaps = 17/153 (11%)
Query: 307 SKYCHRLNSIQAYCDINRDVVGDASH--LSGYSFSA-------QNNIIHPTSVLGSKTT- 356
S Y R+++ ++Y +++D++ ++ + +FS + I + V+ S++
Sbjct: 283 SSYAGRIDNFRSYDTVSKDIIQRWTYPYVPDINFSGNRPLKLGRQGIYKASDVVQSRSAD 342
Query: 357 IGPQCMLAEGSQLGDKCSVKRSVIGRHCRIGSNVKIVNSVVMNHVVIEDGCHIQGSVICN 416
+G ++ G+++G + SVIG C IGSNV I S + N+V IEDGC I+ +++C+
Sbjct: 343 VGASTVIGYGTKIGHGDKIMNSVIGNGCSIGSNVVIEGSYIWNNVTIEDGCEIRNAIVCD 402
Query: 417 NVQLQERAVLK-------DCQVGAGYIVTASSE 442
V+++ AVL+ + VG ++V A S+
Sbjct: 403 GVKIRAGAVLQPGVVLSFNVVVGRDFVVPAYSK 435
>AT4G18300.1 | chr4:10118852-10120981 FORWARD LENGTH=710
Length = 709
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Query: 297 YRCCVYIATKSKYCHRLNSIQAYCDINRDVVGDASH--LSGYSFSA-------QNNIIHP 347
Y+ + S Y R++++++Y +++D++ ++ + FS + I
Sbjct: 264 YKIFTHEIQSSCYAARIDNLRSYDTVSKDIIQRWTYPYVPNIDFSGNRPVKLGRRGIYRA 323
Query: 348 TSVLGSKTT-IGPQCMLAEGSQLGDKCSVKRSVIGRHCRIGSNVKIVNSVVMNHVVIEDG 406
+ + S T +G ++ G+++G+ + SVIG C IGSNV I S + N+V IEDG
Sbjct: 324 SDAVQSHTADVGASTVIGYGTKIGNGGKIYNSVIGNGCCIGSNVVIQGSYIWNNVTIEDG 383
Query: 407 CHIQGSVICNNVQLQERAVLK 427
C I+ +++C+ V+++ AVL+
Sbjct: 384 CEIRNAIVCDGVKVRAGAVLQ 404
>AT3G02270.1 | chr3:448977-451007 REVERSE LENGTH=677
Length = 676
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 357 IGPQCMLAEGSQLGDKCSVKRSVIGRHCRIGSNVKIVNSVVMNHVVIEDGCHIQGSVICN 416
+G ++ + +G + SVIG C IGSNV I S + N+V +EDGC I+ +++C+
Sbjct: 325 VGASYVIGHATNIGSGTKILNSVIGNGCSIGSNVVIQGSYIWNNVTVEDGCEIRNAIVCD 384
Query: 417 NVQLQERAVLK-------DCQVGAGYIVTASSE 442
V++ A++K VG ++V A S+
Sbjct: 385 EVKVCAGAIVKPGVVLSFKVVVGRDFVVPAYSQ 417
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,423,341
Number of extensions: 316102
Number of successful extensions: 765
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 755
Number of HSP's successfully gapped: 5
Length of query: 455
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 353
Effective length of database: 8,310,137
Effective search space: 2933478361
Effective search space used: 2933478361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)