Os06g0313900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF827, plant family protein.
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Os06g0313900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF827, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 215.47 | 0.69 | 3.35 | -0.047 | 0.151 | 2.11 | -0.0365 | -12.3 | -0.096 | 6.59 | 54.03 | 8 | 8.38 | -- |
| 237.36 | 0.723 | 3.33 | 0.0159 | 0.142 | 1.16 | 0.69 | -- | -0.117 | 4.87 | 55 | 7 | 8.6 | -- |
| 215.44 | 0.684 | 3.35 | -0.0556 | 0.155 | 2.16 | -- | -12.7 | -0.1 | 6.61 | 54.01 | 7 | 8.21 | -- |
| 238.01 | 0.719 | 3.33 | 0.0278 | 0.173 | 1.09 | -- | -- | -0.115 | 6.34 | 55 | 4 | 9.56 | -- |
| 216.59 | 0.685 | 3.35 | -0.0503 | -- | 2.07 | -- | -12.7 | -0.0965 | -- | 54.21 | 7 | 8.23 | -- |
| 246.8 | 0.736 | 3.34 | 0.0615 | 0.0353 | -- | -0.479 | -- | -0.147 | 14 | -- | -- | -- | -- |
| 247.25 | 0.736 | 3.34 | 0.0459 | 0.0937 | -- | -- | -- | -0.151 | 9.13 | -- | -- | -- | -- |
| 239.21 | 0.72 | 3.34 | 0.0263 | -- | 0.943 | -- | -- | -0.116 | -- | 54.33 | 2 | 10.3 | -- |
| 238.02 | 0.719 | 3.33 | -- | 0.164 | 1.09 | -- | -- | -0.119 | 6.44 | 54.93 | 4 | 9.54 | -- |
| 247.75 | 0.735 | 3.34 | 0.0457 | -- | -- | -- | -- | -0.15 | -- | -- | -- | -- | -- |
| 247.3 | 0.736 | 3.34 | -- | 0.0937 | -- | -- | -- | -0.156 | 9.09 | -- | -- | -- | -- |
| 239.23 | 0.72 | 3.34 | -- | -- | 0.946 | -- | -- | -0.119 | -- | 54.39 | 2 | 10.3 | -- |
| 247.81 | 0.735 | 3.34 | -- | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 219.62 | radiation | 20 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 31 | 219.75 | radiation | 40 | 90 | > th | dose independent | rect. | 15 | 1 |
| 48 | 219.75 | radiation | 40 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 113 | 220.18 | radiation | 20 | 10 | > th | dose independent | rect. | 16 | 1 |
| 222 | 221.87 | humidity | 60 | 10 | < th | dose independent | rect. | 15 | 3 |
| 258 | 222.24 | wind | 9 | 10 | > th | dose independent | rect. | 19 | 16 |
| 259 | 222.25 | wind | 7 | 30 | > th | dose dependent | rect. | 1 | 10 |
| 263 | 222.25 | wind | 9 | 10 | > th | dose dependent | rect. | 19 | 16 |
| 265 | 222.30 | humidity | 60 | 10 | < th | dose independent | rect. | 10 | 1 |
| 267 | 222.30 | humidity | 60 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 270 | 222.32 | wind | 9 | 30 | > th | dose independent | rect. | 1 | 10 |
| 296 | 222.38 | wind | 5 | 10 | > th | dose independent | rect. | 10 | 1 |
| 300 | 222.38 | wind | 5 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 306 | 222.39 | wind | 7 | 30 | > th | dose dependent | rect. | 7 | 4 |
| 327 | 222.67 | wind | 1 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 407 | 223.11 | humidity | 60 | 10 | < th | dose independent | rect. | 15 | 1 |
| 483 | 223.32 | humidity | 60 | 10 | < th | dose dependent | sin | 14 | NA |
| 488 | 223.43 | humidity | 60 | 10 | < th | dose dependent | rect. | 15 | 3 |
| 509 | 223.66 | humidity | 60 | 10 | < th | dose independent | sin | 14 | NA |
| 659 | 224.48 | humidity | 60 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 694 | 224.58 | humidity | 60 | 90 | < th | dose independent | sin | 15 | NA |
| 698 | 224.77 | humidity | 60 | 10 | > th | dose independent | sin | 14 | NA |
| 703 | 224.90 | humidity | 60 | 90 | > th | dose independent | sin | 16 | NA |
| 734 | 225.55 | wind | 1 | 90 | < th | dose independent | rect. | 15 | 1 |
| 747 | 226.02 | wind | 3 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 899 | 227.25 | wind | 3 | 10 | < th | dose independent | rect. | 16 | 1 |
| 959 | 227.82 | humidity | 60 | 10 | < th | dose dependent | rect. | 12 | 6 |