Os06g0301300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os06g0301300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.03 | 0.262 | 10.7 | 0.962 | 0.448 | 0.365 | 0.232 | 0.214 | 0.299 | 15.4 | 25.9 | 40 | -- | -- |
| 31.15 | 0.26 | 10.7 | 0.913 | 0.44 | 0.373 | 0.284 | -- | 0.281 | 15.3 | 25.9 | 42 | -- | -- |
| 31.16 | 0.26 | 10.7 | 0.978 | 0.447 | 0.367 | -- | 0.29 | 0.304 | 15.4 | 25.8 | 42 | -- | -- |
| 31.48 | 0.261 | 10.7 | 0.913 | 0.445 | 0.38 | -- | -- | 0.28 | 15.4 | 25.87 | 42 | -- | -- |
| 37.86 | 0.287 | 10.7 | 0.931 | -- | 0.583 | -- | 0.361 | 0.231 | -- | 25.9 | 39 | -- | -- |
| 38.78 | 0.292 | 10.6 | 1.02 | 0.75 | -- | 0.497 | -- | 0.414 | 15.2 | -- | -- | -- | -- |
| 39.57 | 0.295 | 10.6 | 1.03 | 0.753 | -- | -- | -- | 0.417 | 15.3 | -- | -- | -- | -- |
| 38.11 | 0.288 | 10.7 | 0.837 | -- | 0.597 | -- | -- | 0.196 | -- | 25.8 | 41 | -- | -- |
| 52.53 | 0.338 | 10.7 | -- | 0.315 | 0.494 | -- | -- | 0.157 | 15.2 | 25.9 | 48 | -- | -- |
| 71.64 | 0.396 | 10.6 | 0.996 | -- | -- | -- | -- | 0.397 | -- | -- | -- | -- | -- |
| 67.44 | 0.384 | 10.7 | -- | 0.733 | -- | -- | -- | 0.302 | 15.3 | -- | -- | -- | -- |
| 55.95 | 0.348 | 10.7 | -- | -- | 0.671 | -- | -- | 0.0741 | -- | 25.86 | 57 | -- | -- |
| 97.83 | 0.462 | 10.7 | -- | -- | -- | -- | -- | 0.287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 7 | 30.51 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 19 |
| 16 | 30.87 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 9 |
| 22 | 30.98 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 25 | 31.01 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 18 |
| 33 | 31.11 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 34 | 31.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 14 |
| 35 | 31.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 46 | 31.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 62 | 31.27 | temperature | 20 | 10 | > th | dose dependent | sin | 1 | NA |
| 94 | 31.39 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 115 | 31.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 167 | 31.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 176 | 31.58 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 13 |
| 204 | 31.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 211 | 31.64 | temperature | 10 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 237 | 31.69 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 295 | 31.78 | temperature | 25 | 90 | > th | dose independent | sin | 0 | NA |
| 297 | 31.78 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 303 | 31.78 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 5 |
| 394 | 31.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 420 | 31.89 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 18 |
| 525 | 32.00 | temperature | 25 | 10 | < th | dose independent | rect. | 8 | 8 |
| 553 | 32.02 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 582 | 32.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 722 | 32.18 | temperature | 25 | 10 | > th | dose independent | sin | 23 | NA |
| 738 | 32.19 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 15 |
| 751 | 32.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 784 | 32.22 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 801 | 32.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 872 | 32.29 | temperature | 25 | 10 | < th | dose independent | sin | 23 | NA |
| 919 | 32.31 | temperature | 25 | 10 | > th | dose dependent | rect. | 22 | 18 |
| 959 | 32.34 | radiation | 1 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 975 | 32.35 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 987 | 32.35 | radiation | 1 | 4320 | < th | dose independent | rect. | 19 | 12 |