BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0301300 Os06g0301300|Os06g0301300
         (1653 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0301300  Armadillo-like helical domain containing protein   3315   0.0  

>Os06g0301300 Armadillo-like helical domain containing protein
          Length = 1653

 Score = 3315 bits (8594), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1611/1653 (97%), Positives = 1611/1653 (97%)

Query: 1    MHLYNEWLXXXXXXXXXXXXXXFSGAVGEARAAWRPDDPDSAYATLKWISVFDLFINAKS 60
            MHLYNEWL              FSGAVGEARAAWRPDDPDSAYATLKWISVFDLFINAKS
Sbjct: 1    MHLYNEWLPPAVADAAAREPAAFSGAVGEARAAWRPDDPDSAYATLKWISVFDLFINAKS 60

Query: 61   DISPEDVHALVELGLEIFHASQNKFVVQIKWGGLLVRFLKKHAKRISLGVQWRPLYDTLI 120
            DISPEDVHALVELGLEIFHASQNKFVVQIKWGGLLVRFLKKHAKRISLGVQWRPLYDTLI
Sbjct: 61   DISPEDVHALVELGLEIFHASQNKFVVQIKWGGLLVRFLKKHAKRISLGVQWRPLYDTLI 120

Query: 121  RTHFKRNMGPEGWKVRQQHFETVTSLVRASRSLFPEGAAAEIWSEFSPLLKNPWHNSAFE 180
            RTHFKRNMGPEGWKVRQQHFETVTSLVRASRSLFPEGAAAEIWSEFSPLLKNPWHNSAFE
Sbjct: 121  RTHFKRNMGPEGWKVRQQHFETVTSLVRASRSLFPEGAAAEIWSEFSPLLKNPWHNSAFE 180

Query: 181  GIGFLRLFLPANSRNQDHFTTDWIAECLDIWGSVTNCNFWDIQWAAIVARCIKGSISVDW 240
            GIGFLRLFLPANSRNQDHFTTDWIAECLDIWGSVTNCNFWDIQWAAIVARCIKGSISVDW
Sbjct: 181  GIGFLRLFLPANSRNQDHFTTDWIAECLDIWGSVTNCNFWDIQWAAIVARCIKGSISVDW 240

Query: 241  EKFIPLLFTRYLNMFEVPISSGSGSYPFPLNVPRNTRFLFSSKTRTPSKAIAKSICKTHI 300
            EKFIPLLFTRYLNMFEVPISSGSGSYPFPLNVPRNTRFLFSSKTRTPSKAIAKSICKTHI
Sbjct: 241  EKFIPLLFTRYLNMFEVPISSGSGSYPFPLNVPRNTRFLFSSKTRTPSKAIAKSICKTHI 300

Query: 301  FVLKNIKFRFYHPSNGGRWTYSLERFLRYLVLYFERRLQHEQFEALDDKHNQFCLGKEER 360
            FVLKNIKFRFYHPSNGGRWTYSLERFLRYLVLYFERRLQHEQFEALDDKHNQFCLGKEER
Sbjct: 301  FVLKNIKFRFYHPSNGGRWTYSLERFLRYLVLYFERRLQHEQFEALDDKHNQFCLGKEER 360

Query: 361  CGFVKVVLKFLDRGQYSKDDSLADTVSIATSILSYVEPSLVLPFVATNFQLALETTTATH 420
            CGFVKVVLKFLDRGQYSKDDSLADTVSIATSILSYVEPSLVLPFVATNFQLALETTTATH
Sbjct: 361  CGFVKVVLKFLDRGQYSKDDSLADTVSIATSILSYVEPSLVLPFVATNFQLALETTTATH 420

Query: 421  QLKNAVTSVAFSGRALIXXXXXXXXXXXXXTADTLNDLIVTSLSNALLGMDANDPPKTIA 480
            QLKNAVTSVAFSGRALI             TADTLNDLIVTSLSNALLGMDANDPPKTIA
Sbjct: 421  QLKNAVTSVAFSGRALILSSLCSSQSDDSSTADTLNDLIVTSLSNALLGMDANDPPKTIA 480

Query: 481  TMQLIGSIFSNLATAGFSDDVPAFLQTSYLSEWLDEFFCRLFSVLQNLESSSPINEGYQS 540
            TMQLIGSIFSNLATAGFSDDVPAFLQTSYLSEWLDEFFCRLFSVLQNLESSSPINEGYQS
Sbjct: 481  TMQLIGSIFSNLATAGFSDDVPAFLQTSYLSEWLDEFFCRLFSVLQNLESSSPINEGYQS 540

Query: 541  SIMSGTFLVEDSPYYFCMLEIVLGKLSKPLFNQSLKKIAKFVNANILPGATSEVGLLCCA 600
            SIMSGTFLVEDSPYYFCMLEIVLGKLSKPLFNQSLKKIAKFVNANILPGATSEVGLLCCA
Sbjct: 541  SIMSGTFLVEDSPYYFCMLEIVLGKLSKPLFNQSLKKIAKFVNANILPGATSEVGLLCCA 600

Query: 601  CVHSYPEETALYLVKPILMTIMSSFEGTPTTGYVGREVPSKIATKATLSPALETALDYYL 660
            CVHSYPEETALYLVKPILMTIMSSFEGTPTTGYVGREVPSKIATKATLSPALETALDYYL
Sbjct: 601  CVHSYPEETALYLVKPILMTIMSSFEGTPTTGYVGREVPSKIATKATLSPALETALDYYL 660

Query: 661  RVLAIAISYAGPVLLNYRQEFKNIITSSFQAPSWKVNGAGDHLLRSLLGSLVSYYPIDQY 720
            RVLAIAISYAGPVLLNYRQEFKNIITSSFQAPSWKVNGAGDHLLRSLLGSLVSYYPIDQY
Sbjct: 661  RVLAIAISYAGPVLLNYRQEFKNIITSSFQAPSWKVNGAGDHLLRSLLGSLVSYYPIDQY 720

Query: 721  KPFSCQPIANIIEPWGCSKAHQDREVEMLNFTPKWHDPSQDELSFANELLEFHFQSALED 780
            KPFSCQPIANIIEPWGCSKAHQDREVEMLNFTPKWHDPSQDELSFANELLEFHFQSALED
Sbjct: 721  KPFSCQPIANIIEPWGCSKAHQDREVEMLNFTPKWHDPSQDELSFANELLEFHFQSALED 780

Query: 781  LVSICQRKNHSETGQEKEHLKVTLLRIHSALQGVMSCLPEMRPSYKDGKSKVVEPIIFIA 840
            LVSICQRKNHSETGQEKEHLKVTLLRIHSALQGVMSCLPEMRPSYKDGKSKVVEPIIFIA
Sbjct: 781  LVSICQRKNHSETGQEKEHLKVTLLRIHSALQGVMSCLPEMRPSYKDGKSKVVEPIIFIA 840

Query: 841  GSAGSTVGNSEMREKAAELVHVACRYLLKERTDDSILLALVVRVIDALVNYGSLEYEEWS 900
            GSAGSTVGNSEMREKAAELVHVACRYLLKERTDDSILLALVVRVIDALVNYGSLEYEEWS
Sbjct: 841  GSAGSTVGNSEMREKAAELVHVACRYLLKERTDDSILLALVVRVIDALVNYGSLEYEEWS 900

Query: 901  SHFQAWKLESASIIEPPCNFIIPFHSQGKKRPRWALVDKAHLHNTWRSSQSSYHRYRTNA 960
            SHFQAWKLESASIIEPPCNFIIPFHSQGKKRPRWALVDKAHLHNTWRSSQSSYHRYRTNA
Sbjct: 901  SHFQAWKLESASIIEPPCNFIIPFHSQGKKRPRWALVDKAHLHNTWRSSQSSYHRYRTNA 960

Query: 961  DVSPSXXXXXXXXXXXXXXXHNYETVRSYSGRSLTKLLKRWPSLISNCVLTLTDNLRDSK 1020
            DVSPS               HNYETVRSYSGRSLTKLLKRWPSLISNCVLTLTDNLRDSK
Sbjct: 961  DVSPSSLMVNLMNDLLDLSLHNYETVRSYSGRSLTKLLKRWPSLISNCVLTLTDNLRDSK 1020

Query: 1021 APEHTVLGSCNILGTQTVLRHLTTDSVSLSSFIMGILESSHHESLKCQKAITELFVKYNI 1080
            APEHTVLGSCNILGTQTVLRHLTTDSVSLSSFIMGILESSHHESLKCQKAITELFVKYNI
Sbjct: 1021 APEHTVLGSCNILGTQTVLRHLTTDSVSLSSFIMGILESSHHESLKCQKAITELFVKYNI 1080

Query: 1081 RFSGISRRFFKNTECEADKPGFISLVPKINALSFESNSLHWRYNLMANRVLLLLILASRS 1140
            RFSGISRRFFKNTECEADKPGFISLVPKINALSFESNSLHWRYNLMANRVLLLLILASRS
Sbjct: 1081 RFSGISRRFFKNTECEADKPGFISLVPKINALSFESNSLHWRYNLMANRVLLLLILASRS 1140

Query: 1141 ESDIHSQILSETAGHFLRNLKSQLPHSRMLAISALNTLLQGSPDKASLQDSQQSLDRPEE 1200
            ESDIHSQILSETAGHFLRNLKSQLPHSRMLAISALNTLLQGSPDKASLQDSQQSLDRPEE
Sbjct: 1141 ESDIHSQILSETAGHFLRNLKSQLPHSRMLAISALNTLLQGSPDKASLQDSQQSLDRPEE 1200

Query: 1201 GSILSTGEILNNIIREDGFMSETLNSLSHVHIISDNDGSSKASYGASSFQSGSDKAITYF 1260
            GSILSTGEILNNIIREDGFMSETLNSLSHVHIISDNDGSSKASYGASSFQSGSDKAITYF
Sbjct: 1201 GSILSTGEILNNIIREDGFMSETLNSLSHVHIISDNDGSSKASYGASSFQSGSDKAITYF 1260

Query: 1261 YFDFSASWPRTPSWISLVGGDTFYSSFARIFKRLIQQCGMPVISSLQNALEEFLSSKERS 1320
            YFDFSASWPRTPSWISLVGGDTFYSSFARIFKRLIQQCGMPVISSLQNALEEFLSSKERS
Sbjct: 1261 YFDFSASWPRTPSWISLVGGDTFYSSFARIFKRLIQQCGMPVISSLQNALEEFLSSKERS 1320

Query: 1321 RQCVAAEAMAGMLHSDVTGNLESGNNWLILQLQKIMLSPSVESVPEWAACIRYAVTGKER 1380
            RQCVAAEAMAGMLHSDVTGNLESGNNWLILQLQKIMLSPSVESVPEWAACIRYAVTGKER
Sbjct: 1321 RQCVAAEAMAGMLHSDVTGNLESGNNWLILQLQKIMLSPSVESVPEWAACIRYAVTGKER 1380

Query: 1381 SGSRAPVLREKLLDCLCTPVPQSVATSVLAKRYSFLSVALIEISAPKMSPAEEQYHVKIL 1440
            SGSRAPVLREKLLDCLCTPVPQSVATSVLAKRYSFLSVALIEISAPKMSPAEEQYHVKIL
Sbjct: 1381 SGSRAPVLREKLLDCLCTPVPQSVATSVLAKRYSFLSVALIEISAPKMSPAEEQYHVKIL 1440

Query: 1441 DELLANMSHPSAQIREAIGVTICIACSNMRLSRLFGHGDSLDVSGDIFHFIIASLKSGRS 1500
            DELLANMSHPSAQIREAIGVTICIACSNMRLSRLFGHGDSLDVSGDIFHFIIASLKSGRS
Sbjct: 1441 DELLANMSHPSAQIREAIGVTICIACSNMRLSRLFGHGDSLDVSGDIFHFIIASLKSGRS 1500

Query: 1501 SVLLDVIIGLIYPVLSLQVREHAAGVLASLMKGIDKDLSKDFRDRSYAQAQRILHTRQRG 1560
            SVLLDVIIGLIYPVLSLQVREHAAGVLASLMKGIDKDLSKDFRDRSYAQAQRILHTRQRG
Sbjct: 1501 SVLLDVIIGLIYPVLSLQVREHAAGVLASLMKGIDKDLSKDFRDRSYAQAQRILHTRQRG 1560

Query: 1561 AKSGHSVATIHGAVLALTASVLSVPYDMPSWLPSHVTLLARFIREPSPIKSTVTKAVAEF 1620
            AKSGHSVATIHGAVLALTASVLSVPYDMPSWLPSHVTLLARFIREPSPIKSTVTKAVAEF
Sbjct: 1561 AKSGHSVATIHGAVLALTASVLSVPYDMPSWLPSHVTLLARFIREPSPIKSTVTKAVAEF 1620

Query: 1621 KRTHADTWSIQKEAFTEDELEASSKRFPFNHPF 1653
            KRTHADTWSIQKEAFTEDELEASSKRFPFNHPF
Sbjct: 1621 KRTHADTWSIQKEAFTEDELEASSKRFPFNHPF 1653



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 52,865,563
Number of extensions: 2144871
Number of successful extensions: 4500
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4500
Number of HSP's successfully gapped: 1
Length of query: 1653
Length of database: 17,035,801
Length adjustment: 114
Effective length of query: 1539
Effective length of database: 11,083,405
Effective search space: 17057360295
Effective search space used: 17057360295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 163 (67.4 bits)