BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0301300 Os06g0301300|Os06g0301300
(1653 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13330.1 | chr3:4319804-4330061 REVERSE LENGTH=1817 1793 0.0
>AT3G13330.1 | chr3:4319804-4330061 REVERSE LENGTH=1817
Length = 1816
Score = 1793 bits (4643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 893/1604 (55%), Positives = 1137/1604 (70%), Gaps = 90/1604 (5%)
Query: 1 MHLYNEWLXXXXXXXXXXXXXXFSGAVGEARAAWRPDDPDSAYATLKWISVFDLFINAKS 60
MHLYNEWL F+ V + RPDDP+S YATLKWISV +LF+ AKS
Sbjct: 1 MHLYNEWLPPPVAEETKKEKESFARVVRCVKELHRPDDPESVYATLKWISVIELFVRAKS 60
Query: 61 DISPEDVHALVELGLEIFHASQNKFVVQIKWGGLLVRFLKKHAKRISLGVQWRPLYDTLI 120
++S EDV LVE+GL+IFH+S+NK Q++WG +LVR + K K++SL VQWRPLYDTLI
Sbjct: 61 ELSVEDVSELVEIGLQIFHSSENKLYAQVRWGNVLVRLINKFRKKLSLKVQWRPLYDTLI 120
Query: 121 RTHFKRNMGPEGWKVRQQHFETVTSLVRASRSLFPEGAAAEIWSEFSPLLKNPWHNSAFE 180
HF R+ GPEGW++RQ+HF VTSL+R+ R FP+GAA+EIWSEF LL+NPWHNS+FE
Sbjct: 121 HAHFSRSPGPEGWRLRQRHFMAVTSLIRSCRRFFPQGAASEIWSEFMSLLENPWHNSSFE 180
Query: 181 GIGFLRLFLPANSRNQDHFTTDWIAECLDIWGSVTNCNFWDIQWAAIVARCIKGSISVDW 240
G GF+RLFLP N NQD F+ WI L++W S+ NC FW+ QW +++AR IK +DW
Sbjct: 181 GSGFVRLFLPTNPENQDFFSEKWIKNVLELWDSIPNCQFWNSQWTSVLARVIKNCSFIDW 240
Query: 241 EKFIPLLFTRYLNMFEVPISSGSGSYPFPLNVPRNTRFLFSSKTRTPSKAIAKSI----- 295
E ++P+LF+R+LNMFEVP+++GSGSYPF ++VPRNTRFLFS++T TPSK+IA+SI
Sbjct: 241 ESYLPMLFSRFLNMFEVPVANGSGSYPFSVDVPRNTRFLFSNRTTTPSKSIAQSIVYFLK 300
Query: 296 ----CKTHIFVLKNIKFRFYHPSNGGRWTYSLERFLRYLVLYFERRLQHEQFEAL---DD 348
+ L N+ ++YHPSNGGRWTYSLERFL +LV+ F++RLQ EQ D
Sbjct: 301 PGSSAHEQLEKLVNLLEQYYHPSNGGRWTYSLERFLLHLVIAFQKRLQREQQSYCYRDPD 360
Query: 349 KHNQFCLGKEERCGFVKVVLKFLDRGQYSKDDSLADTVSIATSILSYVEPSLVLPFVATN 408
CLGK ER FV VVLK +DRGQYSK++ L++TV+ ATS+LSYVEPSLVLPFVA+
Sbjct: 361 SLPATCLGKPERVAFVGVVLKLIDRGQYSKNEHLSETVAAATSMLSYVEPSLVLPFVASR 420
Query: 409 FQLALETTTATHQLKNAVTSVAFSGRALIXXXXXXXXXXXX---XTADTLNDLIVTSLSN 465
F LALETTTATHQLK A+ SVAF+GR+++ DLI SLSN
Sbjct: 421 FHLALETTTATHQLKTAMMSVAFAGRSILQSSMSTAKSQDLGGDVDDRMFLDLIGISLSN 480
Query: 466 ALLGMDANDPPKTIATMQLIGSIFSNLATAGFSDDVPAFLQTSYLSEWLDEFFCRLFSVL 525
ALLGMDANDPPKT+ATMQLIGSIFSN+A S D +F+ + SEWLDEF CRL ++L
Sbjct: 481 ALLGMDANDPPKTLATMQLIGSIFSNMAVLDDSSDDLSFMTMASFSEWLDEFLCRLIALL 540
Query: 526 QNLESSSPINEGYQSSIMSGTFLVEDSPYYFCMLEIVLGKLSKPLFNQSLKKIAKFVNAN 585
Q+LE +S INEG SS SGTFLVED PYY+CMLEI+LG+LS L+NQ+LKKI+KFV N
Sbjct: 541 QHLEPNSVINEGLSSSATSGTFLVEDGPYYYCMLEILLGRLSGSLYNQALKKISKFVQTN 600
Query: 586 ILPGATSEVGLLCCACVHSYPEETALYLVKPILMTIMSSFEGTPTTGYVGREVPSKIAT- 644
ILPGA +EVGLLCCACVHS PEE +V+P+L+ ++SS + P GY G+ + +
Sbjct: 601 ILPGAIAEVGLLCCACVHSTPEEAVAQIVEPMLLAVISSLKEIPVNGYGGKGSAETLVSN 660
Query: 645 ---KATLSPALETALDYYLRVLAIAISYAGPVLLNYRQEFKNIITSSFQAPSWKVNGAGD 701
K TLSPALE A+DY L+VL++AI+Y G LL Y+ I+S+F + SWKVNGAGD
Sbjct: 661 KQDKQTLSPALEAAIDYQLKVLSVAITYGGSSLLPYKGLLIEAISSAFNSSSWKVNGAGD 720
Query: 702 HLLRSLLGSLVSYYPIDQYKPFSCQPIANIIEPWGCSKA-HQDREVEMLNFTPKWHDPSQ 760
HLLRSLLGSL+ YYPIDQYK S P A +E W +KA +D +V +WH P+Q
Sbjct: 721 HLLRSLLGSLILYYPIDQYKCLSRHPAAPALEEWISTKASSKDEQVAH----SRWHVPTQ 776
Query: 761 DELSFANELLEFHFQSALEDLVSICQRKNHSETGQEKEHLKVTLLRIHSALQGVMSCLPE 820
+E FANELL+ H QSAL+DL+SICQ HS+ G EK HLKVTLLRI S LQGV+SCLP+
Sbjct: 777 EETQFANELLDLHLQSALDDLLSICQSNIHSDAGDEKTHLKVTLLRIDSTLQGVLSCLPD 836
Query: 821 MRPSYKDGKSKVVEPI-IFIAGSAGSTVGNSEMREKAAELVHVACRYLLKERTDDSILLA 879
RPS + +VE + FIAG++GS VG++E+REK A +H AC+YLL++++DDSILL
Sbjct: 837 FRPS---PRHDMVEDLQFFIAGASGSCVGSAEIREKTAITIHAACKYLLEKKSDDSILLI 893
Query: 880 LVVRVIDALVNYGSLEYEEWSSHFQAWKLESASIIEPPCNFIIPFHSQGKKRPRWALVDK 939
L++R++DAL NYGSLEY+EWS+H QAWKLESA+I+EPP NFI F+S+GK+RPRWAL+DK
Sbjct: 894 LIIRIMDALGNYGSLEYDEWSNHRQAWKLESAAIVEPPANFITEFNSKGKRRPRWALIDK 953
Query: 940 AHLHNTWRSSQSSYHRYRTNADVSPSXXXXXXXXXXXXXXXHNYETVRSYSGRSLTKLLK 999
A++HNTWRSSQSSYH +RT+ + SP HNYETVR +G+SL KLLK
Sbjct: 954 AYMHNTWRSSQSSYHLFRTDGNFSPPEPLTFLVDDLLTLCLHNYETVRVLAGKSLIKLLK 1013
Query: 1000 RWPSLISNCVLTLTDNLRDSKAPEHTVLGSCNILGTQTVLRHLTTDSVSLSSFIMGILES 1059
RWP L+S CVL+LT+NLR E+ VLGSC IL + +VL+HLTTD S SSF++GIL S
Sbjct: 1014 RWPQLLSKCVLSLTENLRKPDVQEYVVLGSCAILSSHSVLKHLTTDPKSFSSFLLGILSS 1073
Query: 1060 SHHESLKCQKAITELFVKYNIRFSGISRRFFKNTECEADKPGFISLVPKINALSFESNSL 1119
SHHES+K QKAI ELFVKYNI F+G+SR ++ E + LV +I ++SF+S+SL
Sbjct: 1074 SHHESMKSQKAIIELFVKYNIHFAGLSRNILRSLESHVEGSTSGDLVSQIGSMSFDSSSL 1133
Query: 1120 HWRYNLMANRVLLLLILASRSESDIHSQILSETAGHFLRNLKSQLPHSRMLAISALNTLL 1179
HWRYNLMANRVLLLL+++SR + +IL ETAGHFL+NLKSQLP +R+LAISALN LL
Sbjct: 1134 HWRYNLMANRVLLLLVMSSRIDPSFSLKILDETAGHFLKNLKSQLPQTRILAISALNILL 1193
Query: 1180 QGSPDKASLQDSQQSLDRPEEGSILSTGEILNNIIREDGFMSETLNSLSHVHIISDNDGS 1239
+ SP K +D + E + S L+ I RE+GF ET SLSH+H I+D D S
Sbjct: 1194 KESPHKMQGKDQPSVSSQETENANSSLDLALSQIFREEGFFKETFESLSHIH-ITDTDSS 1252
Query: 1240 SKASYGASSFQSGSDKAITYFYFDFSASWPRTPSWISLVGGDTFYSSFARIFKRLIQQCG 1299
S+ ++G+SSFQS +DK+IT FYF+FSASWPRTPSWISL+G D FY SFARIFKRL Q+CG
Sbjct: 1253 SRGNHGSSSFQSMADKSITRFYFEFSASWPRTPSWISLLGSDIFYPSFARIFKRLAQECG 1312
Query: 1300 MPVISSLQNALEEFLSSKERSRQCVAAEAMAGMLHSDVTGNLESGNNWLILQLQKIMLSP 1359
+PV+ +L++ LEEF ++KER +QCVAAEA+AG+LHSDV G ++W+++QLQ ++L
Sbjct: 1313 VPVLLALKSPLEEFCNAKERPKQCVAAEALAGVLHSDVNGLFNEWDSWIMVQLQNVILGQ 1372
Query: 1360 SVESVPEWAACIRYAVTGKERSGSRAPVLREKLLDCLCTPVPQSVATSVLAKRYSFLSVA 1419
SVES+PEWAACIRYAVTGK + G++ PV+R+++LDC+ P+P + T+V+AKRY+FLS A
Sbjct: 1373 SVESIPEWAACIRYAVTGKGKQGTKIPVMRQQILDCIVAPLPPTATTTVVAKRYAFLSAA 1432
Query: 1420 LIEISAPKMSPAEEQYHVKILDELLANMSHPSAQIREAIGVTICIACSNMRLSRLFGH-- 1477
LIE+S PKM E + H+ +LDEL+ NMSH SAQIREAIGV + + CSN+RL +
Sbjct: 1433 LIELSPPKMPVTEVKLHIVLLDELICNMSHSSAQIREAIGVILSVLCSNIRLRMSYQQEY 1492
Query: 1478 --------------------------------------GDSLDVSGDI------------ 1487
DSLD S D+
Sbjct: 1493 PTEEGKTDVDSQLKEENWFKLISAKASEAVKNIQQASISDSLDTSTDVDMGNAQSNGDSL 1552
Query: 1488 ---------FHFIIASLKSGRSSVLLDVIIGLIYPVLSLQVREH 1522
FHFII+S KSGR+S LLDVI G +YPV+SLQ H
Sbjct: 1553 DDVKWMETLFHFIISSFKSGRASYLLDVIAGFLYPVMSLQETSH 1596
Score = 187 bits (475), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/126 (71%), Positives = 105/126 (83%), Gaps = 1/126 (0%)
Query: 1517 LQVREHAAGVLASLMKGIDKDLSKDFRDRSYAQAQRILHTR-QRGAKSGHSVATIHGAVL 1575
++VREHAA VLA LMKG D+D + DFRDRSYA+A I R +R + S S+A +HGAVL
Sbjct: 1678 VEVREHAAAVLAGLMKGGDEDFAADFRDRSYAEANSIQKRRNRRKSSSTQSIAGVHGAVL 1737
Query: 1576 ALTASVLSVPYDMPSWLPSHVTLLARFIREPSPIKSTVTKAVAEFKRTHADTWSIQKEAF 1635
L ASVLSVPYDMPSWLP HVTLLARF EP+PIKSTVTKAVAEF+RTHADTW+IQK++F
Sbjct: 1738 GLVASVLSVPYDMPSWLPEHVTLLARFAGEPTPIKSTVTKAVAEFRRTHADTWNIQKDSF 1797
Query: 1636 TEDELE 1641
TED+LE
Sbjct: 1798 TEDQLE 1803
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 34,510,923
Number of extensions: 1436819
Number of successful extensions: 3301
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3290
Number of HSP's successfully gapped: 3
Length of query: 1653
Length of database: 11,106,569
Length adjustment: 112
Effective length of query: 1541
Effective length of database: 8,035,977
Effective search space: 12383440557
Effective search space used: 12383440557
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 119 (50.4 bits)