Os06g0300300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SFT2-like family protein.
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Os06g0300300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SFT2-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.19 | 0.231 | 10.3 | -0.234 | 0.154 | 2.01 | 0.117 | -10.8 | 0.23 | 23 | 999.9 | 60 | -- | -- |
| 25.7 | 0.238 | 10.2 | 0.477 | 0.165 | 0.205 | 0.148 | -- | 0.227 | 23.1 | 996.5 | 145 | -- | -- |
| 24.25 | 0.229 | 10.3 | -0.249 | 0.153 | 2.04 | -- | -10.9 | 0.23 | 23.1 | 999.9 | 60 | -- | -- |
| 25.72 | 0.236 | 10.2 | 0.47 | 0.162 | 0.241 | -- | -- | 0.228 | 23.2 | 996.6 | 211 | -- | -- |
| 25.7 | 0.236 | 10.3 | -0.287 | -- | 2.15 | -- | -11.5 | 0.23 | -- | 999.9 | 59 | -- | -- |
| 26.1 | 0.24 | 10.2 | 0.489 | 0.165 | -- | 0.15 | -- | 0.222 | 23.1 | -- | -- | -- | -- |
| 26.2 | 0.24 | 10.2 | 0.482 | 0.164 | -- | -- | -- | 0.222 | 23.2 | -- | -- | -- | -- |
| 27.32 | 0.243 | 10.2 | 0.471 | -- | 0.286 | -- | -- | 0.227 | -- | 996.4 | 223 | -- | -- |
| 31.33 | 0.261 | 10.2 | -- | 0.168 | 0.27 | -- | -- | 0.18 | 23.3 | 998.1 | 434 | -- | -- |
| 27.88 | 0.247 | 10.2 | 0.486 | -- | -- | -- | -- | 0.223 | -- | -- | -- | -- | -- |
| 32.33 | 0.266 | 10.2 | -- | 0.169 | -- | -- | -- | 0.168 | 23.4 | -- | -- | -- | -- |
| 33.12 | 0.268 | 10.2 | -- | -- | 0.272 | -- | -- | 0.182 | -- | 998.2 | 438 | -- | -- |
| 34.12 | 0.273 | 10.2 | -- | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.41 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 10 | 23.56 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 4 |
| 14 | 23.72 | atmosphere | 1005.0 | 30 | < th | dose independent | rect. | 18 | 14 |
| 18 | 23.73 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 19 | 14 |
| 21 | 23.75 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 54 | 23.84 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 22 | 7 |
| 93 | 23.98 | atmosphere | 1010.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 112 | 24.01 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 137 | 24.04 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 21 | 11 |
| 143 | 24.05 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 167 | 24.08 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 171 | 24.08 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 197 | 24.11 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 201 | 24.11 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 209 | 24.12 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 22 | 5 |
| 217 | 24.13 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 218 | 24.13 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 245 | 24.16 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 291 | 24.19 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 13 |
| 292 | 24.19 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 1 | 22 |
| 293 | 24.19 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 23 | 23 |
| 300 | 24.20 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 301 | 24.20 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 23 | 5 |
| 306 | 24.20 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 3 | 20 |
| 307 | 24.20 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 9 | 23 |
| 313 | 24.20 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 15 | 12 |
| 320 | 24.21 | atmosphere | 1005.0 | 30 | < th | dose independent | rect. | 15 | 17 |
| 324 | 24.21 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 23 | 5 |
| 335 | 24.22 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 342 | 24.22 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 3 | 22 |
| 347 | 24.22 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 349 | 24.22 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 17 | 11 |
| 354 | 24.23 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 372 | 24.24 | atmosphere | 1000.0 | 90 | < th | dose independent | no | NA | NA |
| 384 | 24.24 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 21 | 22 |
| 386 | 24.24 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 19 | 23 |
| 408 | 24.25 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 13 | 23 |
| 409 | 24.25 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 418 | 24.26 | atmosphere | 1005.0 | 30 | > th | dose independent | sin | 11 | NA |
| 419 | 24.26 | atmosphere | 1005.0 | 30 | < th | dose independent | sin | 11 | NA |
| 421 | 24.26 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 442 | 24.26 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 464 | 24.27 | atmosphere | 1000.0 | 90 | > th | dose independent | no | NA | NA |
| 465 | 24.27 | atmosphere | 1005.0 | 270 | < th | dose independent | sin | 13 | NA |
| 491 | 24.27 | atmosphere | 1000.0 | 30 | < th | dose independent | rect. | 17 | 23 |
| 530 | 24.28 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 539 | 24.29 | atmosphere | 1000.0 | 10 | > th | dose independent | no | NA | NA |
| 543 | 24.29 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 594 | 24.30 | temperature | 25.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 738 | 24.34 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 24 | 3 |
| 748 | 24.34 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 762 | 24.34 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 807 | 24.36 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 811 | 24.36 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 5 |
| 894 | 24.39 | atmosphere | 1000.0 | 90 | < th | dose independent | sin | 20 | NA |
| 895 | 24.39 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 1 |
| 897 | 24.39 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 917 | 24.39 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 945 | 24.40 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 19 | 12 |
| 999 | 24.41 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 24 | 1 |