BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0300300 Os06g0300300|AK109425
         (228 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26550.1  | chr4:13402755-13404208 REVERSE LENGTH=226          238   2e-63
AT5G56020.1  | chr5:22684586-22686206 FORWARD LENGTH=231          221   2e-58
AT5G24170.1  | chr5:8189744-8191355 REVERSE LENGTH=164             53   1e-07

>AT4G26550.1 | chr4:13402755-13404208 REVERSE LENGTH=226
          Length = 225

 Score =  238 bits (608), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 123/201 (61%), Positives = 136/201 (67%)

Query: 5   AQAWFTXXXXXXXXXXXXXXXXLLADWNXXXXXXXXXXXXXXXXFDIEAAVRSANDTVSG 64
           +Q WF+                LLADWN                FDIE+AVRSANDTVSG
Sbjct: 2   SQGWFSMGGSSTVDQQQQSGSSLLADWNSYAASRDFEESGGSFGFDIESAVRSANDTVSG 61

Query: 65  TFSVVTKGVRELPGSFQSATSSFPSGKALMYFGLFLATGXXXXXXXXXXXXXXMVIMPQK 124
           TFSVV+KGVR++PGS QSATSS PSGKALMYFGL LA+G              MV+MPQK
Sbjct: 62  TFSVVSKGVRDIPGSLQSATSSMPSGKALMYFGLLLASGVFFIFIAFTMFLPVMVLMPQK 121

Query: 125 FAICFTLGCGLIIASIFALKGPASQFAHMTSMERLPFTGALIGCMVGTIYVSMFLHSYFL 184
           FAICFTLGCG II S FAL+GP +Q AHM+SMERLP T   I  MVGTIYVSM LHSY L
Sbjct: 122 FAICFTLGCGFIIGSFFALRGPKNQLAHMSSMERLPSTLGFIATMVGTIYVSMVLHSYIL 181

Query: 185 SVIFSVLQVLSLAYYTISYFP 205
           SV+FSVLQVL+L YY ISYFP
Sbjct: 182 SVLFSVLQVLALVYYCISYFP 202



>AT5G56020.1 | chr5:22684586-22686206 FORWARD LENGTH=231
          Length = 230

 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/210 (57%), Positives = 134/210 (63%), Gaps = 8/210 (3%)

Query: 1   MHKTAQAWF-----TXXXXXXXXXXXXXXXXLLADWNXXXXXXXXXXXXXXXXFDIEAAV 55
           M K A+ WF     +                LLADWN                FDIE+AV
Sbjct: 1   MEKMAKGWFPMSGTSSSGDQQQQPLQTGGTSLLADWNSYAASRDFEEDTGTLGFDIESAV 60

Query: 56  RSANDTVSGTFSVVTKGVRELPGSFQSATSSFPSGKALMYFGLFLATGXXXXXXXXXXXX 115
           RSANDTVSGTF+VV+KGVR+   + QSATSS PSGKALMYFGL LA+G            
Sbjct: 61  RSANDTVSGTFNVVSKGVRD---NLQSATSSMPSGKALMYFGLLLASGVFFIFIAFTMFL 117

Query: 116 XXMVIMPQKFAICFTLGCGLIIASIFALKGPASQFAHMTSMERLPFTGALIGCMVGTIYV 175
             MV+MPQKFAICFTLGCG II S FAL+GP +Q AHM+S ERLP T   I  MVGTIYV
Sbjct: 118 PVMVLMPQKFAICFTLGCGFIIGSFFALRGPQNQLAHMSSAERLPLTLGFIATMVGTIYV 177

Query: 176 SMFLHSYFLSVIFSVLQVLSLAYYTISYFP 205
           SM LHSY LSVIFS LQV++LAYY ISYFP
Sbjct: 178 SMVLHSYILSVIFSALQVIALAYYCISYFP 207



>AT5G24170.1 | chr5:8189744-8191355 REVERSE LENGTH=164
          Length = 163

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%)

Query: 121 MPQKFAICFTLGCGLIIASIFALKGPASQFAHMTSMERLPFTGALIGCMVGTIYVSMFLH 180
           +P KFA+ FT G  L I S   L GP  Q + M    R   T   IGC+V  +  ++ +H
Sbjct: 61  IPIKFALLFTFGNVLAIGSTAFLMGPEQQMSMMFDPVRFLATSIYIGCVVVALICALLIH 120

Query: 181 SYFLSVIFSVLQVLSLAYYTISYFP 205
           S  L+V+  + ++ +L +Y++SY P
Sbjct: 121 SKILTVLAILCEICALIWYSLSYIP 145



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,934,544
Number of extensions: 84450
Number of successful extensions: 260
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 4
Length of query: 228
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 133
Effective length of database: 8,502,049
Effective search space: 1130772517
Effective search space used: 1130772517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 110 (47.0 bits)