BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0300300 Os06g0300300|AK109425
         (228 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0300300  SFT2-like family protein                            306   7e-84
Os06g0608600  SFT2-like family protein                            200   8e-52

>Os06g0300300 SFT2-like family protein
          Length = 228

 Score =  306 bits (784), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 163/228 (71%), Positives = 163/228 (71%)

Query: 1   MHKTAQAWFTXXXXXXXXXXXXXXXXLLADWNXXXXXXXXXXXXXXXXFDIEAAVRSAND 60
           MHKTAQAWFT                LLADWN                FDIEAAVRSAND
Sbjct: 1   MHKTAQAWFTGGPAAPAASAGESQPSLLADWNSYAASRPDASSSSPLPFDIEAAVRSAND 60

Query: 61  TVSGTFSVVTKGVRELPGSFQSATSSFPSGKALMYFGLFLATGXXXXXXXXXXXXXXMVI 120
           TVSGTFSVVTKGVRELPGSFQSATSSFPSGKALMYFGLFLATG              MVI
Sbjct: 61  TVSGTFSVVTKGVRELPGSFQSATSSFPSGKALMYFGLFLATGIFFVFIAFALFLPVMVI 120

Query: 121 MPQKFAICFTLGCGLIIASIFALKGPASQFAHMTSMERLPFTGALIGCMVGTIYVSMFLH 180
           MPQKFAICFTLGCGLIIASIFALKGPASQFAHMTSMERLPFTGALIGCMVGTIYVSMFLH
Sbjct: 121 MPQKFAICFTLGCGLIIASIFALKGPASQFAHMTSMERLPFTGALIGCMVGTIYVSMFLH 180

Query: 181 SYFLSVIFSVLQVLSLAYYTISYFPXXXXXXXXXXXXXXXXXXXCFGR 228
           SYFLSVIFSVLQVLSLAYYTISYFP                   CFGR
Sbjct: 181 SYFLSVIFSVLQVLSLAYYTISYFPGGSSGLKFISSSLLSSVTSCFGR 228



>Os06g0608600 SFT2-like family protein
          Length = 231

 Score =  200 bits (508), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 107/176 (60%), Positives = 115/176 (65%)

Query: 53  AAVRSANDTVSGTFSVVTKGVRELPGSFQSATSSFPSGKALMYFGLFLATGXXXXXXXXX 112
           AAVRSAND VSGTF VV+KGV  LPGSF+S TSS PS K+L+YFGLFLA+G         
Sbjct: 56  AAVRSANDRVSGTFGVVSKGVLGLPGSFKSTTSSVPSSKSLVYFGLFLASGIFLVFIAFT 115

Query: 113 XXXXXMVIMPQKFAICFTLGCGLIIASIFALKGPASQFAHMTSMERLPFTGALIGCMVGT 172
                MVIMPQKFAICFT GC  II S FALKGP +Q  HM S ERLPFT   +G M  T
Sbjct: 116 IFLPVMVIMPQKFAICFTAGCAFIIGSFFALKGPKNQLYHMISKERLPFTMGFVGSMAAT 175

Query: 173 IYVSMFLHSYFLSVIFSVLQVLSLAYYTISYFPXXXXXXXXXXXXXXXXXXXCFGR 228
           IYVSM LHSY LSV FS LQVL+LAYY ISYFP                   CFGR
Sbjct: 176 IYVSMVLHSYILSVFFSCLQVLALAYYAISYFPGGSAGMKFLSSALVSSVLRCFGR 231



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,425,601
Number of extensions: 123234
Number of successful extensions: 337
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 2
Length of query: 228
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 131
Effective length of database: 11,971,043
Effective search space: 1568206633
Effective search space used: 1568206633
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 154 (63.9 bits)