Os06g0275900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SMAD/FHA domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0275900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : SMAD/FHA domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.74 | 0.18 | 10.9 | 0.155 | 0.253 | -0.572 | -0.135 | -0.507 | 0.0421 | 6.93 | 25.89 | 119 | -- | -- |
| 15.13 | 0.181 | 10.9 | 0.078 | 0.259 | -0.536 | -0.176 | -- | 0.0258 | 6.89 | 26.36 | 121 | -- | -- |
| 14.78 | 0.179 | 10.9 | 0.154 | 0.253 | -0.58 | -- | -0.52 | 0.0411 | 6.74 | 26 | 114 | -- | -- |
| 15.19 | 0.182 | 10.9 | 0.0722 | 0.261 | -0.545 | -- | -- | 0.0216 | 6.66 | 26.56 | 107 | -- | -- |
| 17.37 | 0.194 | 10.9 | 0.151 | -- | -0.578 | -- | -0.524 | 0.0688 | -- | 24.1 | 41 | -- | -- |
| 19.31 | 0.206 | 10.9 | 0.212 | 0.22 | -- | -0.209 | -- | 0.14 | 8.78 | -- | -- | -- | -- |
| 19.45 | 0.207 | 10.9 | 0.205 | 0.221 | -- | -- | -- | 0.14 | 8.75 | -- | -- | -- | -- |
| 17.79 | 0.197 | 10.9 | 0.0893 | -- | -0.521 | -- | -- | 0.0557 | -- | 24.2 | 37 | -- | -- |
| 15.3 | 0.182 | 10.9 | -- | 0.269 | -0.578 | -- | -- | 0.00642 | 6.5 | 26.73 | 106 | -- | -- |
| 22.23 | 0.22 | 10.9 | 0.205 | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
| 20.56 | 0.212 | 10.9 | -- | 0.222 | -- | -- | -- | 0.117 | 8.68 | -- | -- | -- | -- |
| 17.99 | 0.198 | 10.9 | -- | -- | -0.551 | -- | -- | 0.0416 | -- | 24.2 | 37 | -- | -- |
| 23.34 | 0.226 | 10.9 | -- | -- | -- | -- | -- | 0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 2 | 13.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 5 | 13.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 8 | 13.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 50 | 14.37 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 53 | 14.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 64 | 14.44 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 101 | 14.63 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 104 | 14.63 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 133 | 14.75 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 154 | 14.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 166 | 14.84 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 22 |
| 167 | 14.84 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 178 | 14.86 | temperature | 15 | 10 | > th | dose dependent | rect. | 19 | 20 |
| 185 | 14.87 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 196 | 14.89 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 215 | 14.93 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 17 |
| 224 | 14.94 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 237 | 14.98 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 238 | 14.99 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 20 |
| 239 | 14.99 | temperature | 10 | 90 | > th | dose dependent | sin | 8 | NA |
| 248 | 15.00 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 290 | 15.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 320 | 15.10 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 321 | 15.10 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 461 | 15.26 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 20 |
| 534 | 15.33 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 9 |
| 607 | 15.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 649 | 15.43 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 23 |
| 652 | 15.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 16 |
| 669 | 15.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 744 | 15.50 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 855 | 15.57 | temperature | 25 | 720 | < th | dose dependent | sin | 20 | NA |
| 869 | 15.58 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 10 |
| 975 | 15.65 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 18 |