BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0275900 Os06g0275900|AK066767
         (764 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0275900  SMAD/FHA domain containing protein                 1101   0.0  
Os08g0326100  SMAD/FHA domain containing protein                   99   1e-20

>Os06g0275900 SMAD/FHA domain containing protein
          Length = 764

 Score = 1101 bits (2848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/712 (78%), Positives = 558/712 (78%)

Query: 53  VEGASTSSSMXXXXXXXXXXXXXXEVEGADASAEGGTXXXXXXXXXXXGNLGRGSRDIEM 112
           VEGASTSSSM              EVEGADASAEGGT           GNLGRGSRDIEM
Sbjct: 53  VEGASTSSSMPPPPPPRPAAPPQPEVEGADASAEGGTSASDSEADEAAGNLGRGSRDIEM 112

Query: 113 AEXXXXXXXXXXXXXXXXXYAIPEWSAAPGHPFFLEVLKDGTIVDKLDVSRKGAYMFGRI 172
           AE                 YAIPEWSAAPGHPFFLEVLKDGTIVDKLDVSRKGAYMFGRI
Sbjct: 113 AEAAAPPPSQQQQPRPRAPYAIPEWSAAPGHPFFLEVLKDGTIVDKLDVSRKGAYMFGRI 172

Query: 173 DLCDFVLEHPTISRFHAVLQFRNDGEVFLYDLGSTHGSFINKTQVKKKIYVEIHVGDVIR 232
           DLCDFVLEHPTISRFHAVLQFRNDGEVFLYDLGSTHGSFINKTQVKKKIYVEIHVGDVIR
Sbjct: 173 DLCDFVLEHPTISRFHAVLQFRNDGEVFLYDLGSTHGSFINKTQVKKKIYVEIHVGDVIR 232

Query: 233 FGQSSRLYIFQGPSELMPPEKDMQKLRDARVQQDMLDREASLLRAKNQAALAEGISWGMX 292
           FGQSSRLYIFQGPSELMPPEKDMQKLRDARVQQDMLDREASLLRAKNQAALAEGISWGM 
Sbjct: 233 FGQSSRLYIFQGPSELMPPEKDMQKLRDARVQQDMLDREASLLRAKNQAALAEGISWGMS 292

Query: 293 XXXXXXXXXXXXXXITWQTYKGQLTDRQEKTRSKIIKRLEKITNMKKEIDAIRAKDISXX 352
                         ITWQTYKGQLTDRQEKTRSKIIKRLEKITNMKKEIDAIRAKDIS  
Sbjct: 293 EDAVEDSAEDEADEITWQTYKGQLTDRQEKTRSKIIKRLEKITNMKKEIDAIRAKDISQG 352

Query: 353 XXXXXXXXXIARNEQRTSQXXXXXXXXXXXXXDSIRESLGARTGNSNRGSHKAXXXXXXX 412
                    IARNEQRTSQ             DSIRESLGARTGNSNRGSHKA       
Sbjct: 353 GLTQGQQTQIARNEQRTSQLMEELENLEETLNDSIRESLGARTGNSNRGSHKASLEEEDD 412

Query: 413 XXXXXXXFYDRTXXXXXXXXXXEQQVETADSLLDKKDTITSDIXXXXXXXXXXXXXXXXS 472
                  FYDRT          EQQVETADSLLDKKDTITSDI                S
Sbjct: 413 ILSDEDDFYDRTKKKSSSHKSSEQQVETADSLLDKKDTITSDIESKKKLVEEEKNKLAKS 472

Query: 473 ENADVGDDLDAYMSGLSSQLVHDKIAQIQKELSDLQTELGRVVYLLKIADPMGEAARKRD 532
           ENADVGDDLDAYMSGLSSQLVHDKIAQIQKELSDLQTELGRVVYLLKIADPMGEAARKRD
Sbjct: 473 ENADVGDDLDAYMSGLSSQLVHDKIAQIQKELSDLQTELGRVVYLLKIADPMGEAARKRD 532

Query: 533 LKPRETKSPASNDSLRPESRKQNKVAQNKASTEEKLKESCAEKTQVDKPAEEEKGISTNQ 592
           LKPRETKSPASNDSLRPESRKQNKVAQNKASTEEKLKESCAEKTQVDKPAEEEKGISTNQ
Sbjct: 533 LKPRETKSPASNDSLRPESRKQNKVAQNKASTEEKLKESCAEKTQVDKPAEEEKGISTNQ 592

Query: 593 ENGSKPAFSIPKPQWLGDKRTVESEENCIKEESANEEETDNFVDYKDRKTILSGSANGKD 652
           ENGSKPAFSIPKPQWLGDKRTVESEENCIKEESANEEETDNFVDYKDRKTILSGSANGKD
Sbjct: 593 ENGSKPAFSIPKPQWLGDKRTVESEENCIKEESANEEETDNFVDYKDRKTILSGSANGKD 652

Query: 653 LEEAAPGLILRKRKSDQXXXXXXXXXXXXXXXXXXXXXLLLKHKRGLQTSEDMEDENEPQ 712
           LEEAAPGLILRKRKSDQ                     LLLKHKRGLQTSEDMEDENEPQ
Sbjct: 653 LEEAAPGLILRKRKSDQSAANEVESSVESEASAADAVALLLKHKRGLQTSEDMEDENEPQ 712

Query: 713 AXXXXXXXXXXXXVLGPARPDFLDAGPDHETWVPPEGQTGDGRTSLNDRLGY 764
           A            VLGPARPDFLDAGPDHETWVPPEGQTGDGRTSLNDRLGY
Sbjct: 713 ASKRKSKKSKQKRVLGPARPDFLDAGPDHETWVPPEGQTGDGRTSLNDRLGY 764



>Os08g0326100 SMAD/FHA domain containing protein
          Length = 421

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 75/112 (66%), Gaps = 5/112 (4%)

Query: 135 PEWSAAPGHP--FFLEVLKDGTIVDKLDVSRKGAYMFGR-IDLCDFVLEHPTISRFHAVL 191
           P+W+  P  P  ++LEVLKDG ++D++++ +K  ++FGR +  CDFVL+H ++SR HA +
Sbjct: 92  PDWAIEP-RPGVYYLEVLKDGDVIDRINLEKK-RHIFGRQVPACDFVLDHQSVSRQHAAV 149

Query: 192 QFRNDGEVFLYDLGSTHGSFINKTQVKKKIYVEIHVGDVIRFGQSSRLYIFQ 243
               +G +++ DLGS HG+F+   ++ K   VE+ VG  +RF  S+R YI +
Sbjct: 150 VPHRNGSIYVIDLGSVHGTFVANERLTKDNPVELEVGQSLRFAASTRTYILR 201



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,601,082
Number of extensions: 670507
Number of successful extensions: 1907
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1905
Number of HSP's successfully gapped: 2
Length of query: 764
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 655
Effective length of database: 11,344,475
Effective search space: 7430631125
Effective search space used: 7430631125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 160 (66.2 bits)