BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0275900 Os06g0275900|AK066767
(764 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G38840.1 | chr5:15551329-15554846 FORWARD LENGTH=736 508 e-144
AT5G47790.1 | chr5:19351396-19352579 FORWARD LENGTH=370 98 2e-20
AT3G20550.1 | chr3:7174695-7177600 REVERSE LENGTH=315 76 9e-14
AT1G34355.1 | chr1:12536497-12541730 FORWARD LENGTH=1478 65 1e-10
>AT5G38840.1 | chr5:15551329-15554846 FORWARD LENGTH=736
Length = 735
Score = 508 bits (1308), Expect = e-144, Method: Compositional matrix adjust.
Identities = 296/657 (45%), Positives = 383/657 (58%), Gaps = 35/657 (5%)
Query: 132 YAIPEWSAAPGHPFFLEVLKDGTIVDKLDVSRKGAYMFGRIDLCDFVLEHPTISRFHAVL 191
Y IPEWS P H F LEVLK+G IV+KLDV +KGAY+FGR +CDF LEHP+ISRFHAV+
Sbjct: 90 YTIPEWSGPPCHQFQLEVLKEGAIVEKLDVYKKGAYLFGRDGICDFALEHPSISRFHAVI 149
Query: 192 QFRNDGEVFLYDLGSTHGSFINKTQVKKKIYVEIHVGDVIRFGQSSRLYIFQGPSELMPP 251
Q++ G +++DLGSTHG+ +NK +V KK++V+++VGDVIRFG S+RLYIFQGPS+LMPP
Sbjct: 150 QYKRSGAAYIFDLGSTHGTTVNKNKVDKKVFVDLNVGDVIRFGGSTRLYIFQGPSDLMPP 209
Query: 252 EKDMQKLRDARVQQDMLDREASLLRAKNQAALAEGISWGMXXXXXXXXXXXXXXXITWQT 311
EKD+Q +R+A+++ +M +REASL RA+ QA++A+G+SWGM ITWQT
Sbjct: 210 EKDLQLIREAKMRMEMSEREASLRRARQQASMADGVSWGM-GEDAIEEEEDDVEEITWQT 268
Query: 312 YKGQLTDRQEKTRSKIIKRLEKITNMKKEIDAIRAKDISXXXXXXXXXXXIARNEQRTSQ 371
Y G+LT +QEKT+ K++KRLEKI +MKKE+ AIRAKDIS IARNEQRT++
Sbjct: 269 YSGELTPKQEKTKEKVLKRLEKIGHMKKEVAAIRAKDISQGGLTQGQQTQIARNEQRTAE 328
Query: 372 XXXXXXXXXXXXXDSIRESLGARTG-NSNRGSHKAXXXXXXXXXXXXXXFYDRTXXXXXX 430
DSIRESLGA+TG G K FYDRT
Sbjct: 329 LLEELENLEETLNDSIRESLGAKTGRKPTHGKKKGIVEDEEDLSSDEDDFYDRTQKKPST 388
Query: 431 XXXXEQQ-VETADSLLDKKDTITSDIXXXXXXXXXXXXXXXXSENA------DVGDDLDA 483
E Q VET DSL+DK+D + +I +EN D D LDA
Sbjct: 389 KKGSENQTVETVDSLVDKRDNVLKEI-EAKNEQLLTEKSKMETENVTEVTSGDSLDALDA 447
Query: 484 YMSGLSSQLVHDKIAQIQKELSDLQTELGRVVYLLKIADPMGEAARKRDLKPRETKSPAS 543
YM+GLS+ LV DK AQIQ+ELS LQ+EL R++YLLKIADP GE +KR+LK +E K S
Sbjct: 448 YMTGLSTTLVQDKTAQIQQELSTLQSELSRILYLLKIADPTGEEVKKRELKSQELKIKKS 507
Query: 544 NDSLRPESRKQNKVAQNKASTEEKLKESCAEKTQVD---KPAEEEKGISTNQENGSKPAF 600
P K+ + +A E KE K VD KP E K T +E K
Sbjct: 508 E---TPSVEKKINIPLKQADPNEH-KEKEVAKDLVDSENKPEVENKASETAEEK--KTTV 561
Query: 601 SIP-KPQWLGD--KRTVESEEN--CIKEESANEEETDNFVDYKDRKTILSGSANGKDLEE 655
+P KPQWLG + + E+N + + + E+ D FVDYK+RK I + G E
Sbjct: 562 YVPSKPQWLGSAANKAIIEEKNPEIVAATTDSTEDADGFVDYKNRKNIALTATAGV---E 618
Query: 656 AAPGLILRKRKS-DQXXXXXXXXXXXXXXXXXXXXXLLLKHKRGLQTSED------MEDE 708
GLI+RKRK D+ LLLKH G +E+ E+
Sbjct: 619 VVTGLIIRKRKQEDKSEEDDDSKEKQAEVMAQDAVALLLKHSVGHHVNEEDKELSKQEEN 678
Query: 709 NEPQAXX-XXXXXXXXXXVLGPARPDFLDAGPDHETWVPPEGQTGDGRTSLNDRLGY 764
N+ V+GP +P++LD D+++WVPP GQ+GDGRTSLNDRLGY
Sbjct: 679 NQGSGQSKTKKKKKTAKKVVGPDKPEYLDETIDYDSWVPPAGQSGDGRTSLNDRLGY 735
>AT5G47790.1 | chr5:19351396-19352579 FORWARD LENGTH=370
Length = 369
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 11/164 (6%)
Query: 135 PEWSAAP-GHPFFLEVLKDGTIVDKLDVSRKGAYMFGR-IDLCDFVLEHPTISRFHAVLQ 192
P+W+ P + LEV+KDG I+D++ + R+ ++FGR CDFVL+H ++SR HA +
Sbjct: 55 PDWAIEPRAGVYSLEVVKDGQILDRIHLDRR-RHIFGRQHQTCDFVLDHQSVSRQHAAVV 113
Query: 193 FRNDGEVFLYDLGSTHGSFINKTQVKKKIYVEIHVGDVIRFGQSSRLYIFQGPSELM--- 249
+G +F+ DLGS HG+F+ ++ K VE+ VG +RF S+R+Y+ + SE +
Sbjct: 114 PHKNGSIFVIDLGSAHGTFVANERLTKDTPVELEVGQSLRFAASTRIYLLRKNSEALFSR 173
Query: 250 PPEKDMQKLRDARVQQDMLDREASLLRAK--NQAALAEGISWGM 291
PP KL D D EA + N+ L+ G S GM
Sbjct: 174 PPPPAEIKLPPP---PDASDEEAVVAYNTLLNRYGLSNGESGGM 214
>AT3G20550.1 | chr3:7174695-7177600 REVERSE LENGTH=315
Length = 314
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 14/122 (11%)
Query: 135 PEWSAAPGHPFFLEVLKDGTIVDK-LDVSRKGAYMFGR-IDLCDFVLEHPTISRFHAVLQ 192
P + P + L V KDG +++ L + R+ Y+FGR + D +HP+ S+ HAV+Q
Sbjct: 186 PPEARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSKQHAVIQ 245
Query: 193 FRN------DGEV------FLYDLGSTHGSFINKTQVKKKIYVEIHVGDVIRFGQSSRLY 240
+R DG + ++ DLGST+ ++IN++ ++ + Y E+ D I+FG SSR Y
Sbjct: 246 YREMEKEKPDGMMGKQVKPYIMDLGSTNKTYINESPIEPQRYYELFEKDTIKFGNSSREY 305
Query: 241 IF 242
+
Sbjct: 306 VL 307
>AT1G34355.1 | chr1:12536497-12541730 FORWARD LENGTH=1478
Length = 1477
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 151 KDGTIVDKLDVSRKGAYMFGRIDLCDFVLEHPTISRFHAVLQFRNDG---EVFLYDLGST 207
++G+ V D + + GR CD +L HP+ISRFH L+ R+ ++F+ DL S
Sbjct: 48 RNGSTVSDDDGEVEEILVVGRHPDCDILLTHPSISRFH--LEIRSISSRQKLFVTDLSSV 105
Query: 208 HGSFINKTQVKKKIYVEIHVGDVIRFGQSSRLY 240
HG+++ +++ VE+ GD IR G S+R+Y
Sbjct: 106 HGTWVRDLRIEPHGCVEVEEGDTIRIGGSTRIY 138
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,013,753
Number of extensions: 450421
Number of successful extensions: 1734
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1735
Number of HSP's successfully gapped: 4
Length of query: 764
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 658
Effective length of database: 8,200,473
Effective search space: 5395911234
Effective search space used: 5395911234
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 116 (49.3 bits)