Os06g0256300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calmodulin-binding heat-shock protein.
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Os06g0256300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calmodulin-binding heat-shock protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.59 | 0.321 | 8.67 | -0.131 | 1.18 | -0.404 | 0.317 | 0.423 | -0.0804 | 2.11 | 21.41 | 981 | -- | -- |
| 47.07 | 0.32 | 8.68 | -0.215 | 1.18 | -0.45 | 0.41 | -- | -0.0929 | 2.08 | 21.5 | 988 | -- | -- |
| 46.95 | 0.319 | 8.67 | -0.119 | 1.18 | -0.398 | -- | 0.511 | -0.0791 | 2.14 | 21.5 | 980 | -- | -- |
| 47.41 | 0.321 | 8.68 | -0.23 | 1.18 | -0.474 | -- | -- | -0.113 | 2.12 | 20.85 | 960 | -- | -- |
| 114.92 | 0.502 | 8.68 | -0.34 | -- | -0.496 | -- | -0.458 | -0.107 | -- | 21.5 | 1730 | -- | -- |
| 53.12 | 0.342 | 8.71 | -0.406 | 1.13 | -- | 0.445 | -- | -0.227 | 2.24 | -- | -- | -- | -- |
| 53.85 | 0.344 | 8.71 | -0.419 | 1.13 | -- | -- | -- | -0.229 | 2.28 | -- | -- | -- | -- |
| 116.19 | 0.504 | 8.67 | -0.227 | -- | -0.484 | -- | -- | -0.0813 | -- | 21.5 | 1740 | -- | -- |
| 48.62 | 0.325 | 8.68 | -- | 1.17 | -0.544 | -- | -- | -0.0777 | 2.09 | 20.8 | 991 | -- | -- |
| 129.71 | 0.532 | 8.7 | -0.371 | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
| 58.47 | 0.358 | 8.7 | -- | 1.12 | -- | -- | -- | -0.183 | 2.27 | -- | -- | -- | -- |
| 117.5 | 0.507 | 8.66 | -- | -- | -0.514 | -- | -- | -0.0497 | -- | 21.5 | 1740 | -- | -- |
| 133.34 | 0.539 | 8.69 | -- | -- | -- | -- | -- | -0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.88 | radiation | 1 | 30 | > th | dose dependent | rect. | 7 | 5 |
| 2 | 42.15 | radiation | 1 | 30 | > th | dose dependent | rect. | 17 | 19 |
| 3 | 42.20 | radiation | 1 | 30 | > th | dose dependent | rect. | 5 | 7 |
| 63 | 43.35 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 6 |
| 78 | 43.47 | humidity | 90 | 30 | < th | dose dependent | rect. | 7 | 5 |
| 80 | 43.50 | humidity | 90 | 30 | < th | dose dependent | rect. | 24 | 12 |
| 82 | 43.52 | humidity | 90 | 30 | < th | dose dependent | rect. | 3 | 9 |
| 94 | 43.65 | humidity | 90 | 30 | < th | dose dependent | rect. | 22 | 14 |
| 116 | 43.96 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 120 | 44.06 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 3 |
| 121 | 44.08 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 130 | 44.18 | humidity | 90 | 30 | < th | dose dependent | rect. | 20 | 16 |
| 143 | 44.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 168 | 44.65 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 9 |
| 170 | 44.68 | humidity | 80 | 10 | < th | dose independent | rect. | 24 | 12 |
| 171 | 44.68 | radiation | 1 | 90 | > th | dose dependent | sin | 8 | NA |
| 172 | 44.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 2 |
| 204 | 44.75 | humidity | 80 | 10 | < th | dose independent | rect. | 4 | 8 |
| 236 | 44.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 242 | 44.80 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 284 | 44.92 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 287 | 44.93 | humidity | 60 | 30 | > th | dose independent | rect. | 12 | 5 |
| 302 | 44.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 305 | 45.04 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 7 |
| 307 | 45.04 | temperature | 20 | 720 | < th | dose dependent | rect. | 2 | 3 |
| 309 | 45.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 330 | 45.11 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 360 | 45.19 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 11 |
| 407 | 45.23 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 435 | 45.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 439 | 45.28 | humidity | 90 | 30 | < th | dose dependent | sin | 6 | NA |
| 462 | 45.33 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 14 |
| 535 | 45.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 584 | 45.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 611 | 45.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 660 | 45.68 | radiation | 1 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 682 | 45.70 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 722 | 45.77 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 762 | 45.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 796 | 45.89 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 830 | 45.94 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 2 |
| 839 | 45.95 | humidity | 50 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 846 | 45.95 | humidity | 50 | 90 | > th | dose dependent | rect. | 23 | 17 |
| 911 | 46.02 | temperature | 20 | 30 | > th | dose independent | rect. | 12 | 5 |
| 912 | 46.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 956 | 46.04 | radiation | 10 | 90 | > th | dose independent | sin | 6 | NA |
| 959 | 46.04 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 5 |
| 966 | 46.05 | temperature | 30 | 30 | < th | dose independent | rect. | 12 | 5 |