Os06g0255300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0255300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.65 | 0.243 | 12.8 | 1.05 | 0.123 | -0.455 | -0.257 | 3 | 0.381 | 2.48 | 25.97 | 1219 | -- | -- |
| 29.07 | 0.251 | 12.8 | 0.357 | 0.132 | -0.123 | -0.234 | -- | 0.275 | 3.98 | 25.68 | 9982 | -- | -- |
| 26.86 | 0.241 | 12.8 | 1.06 | 0.12 | -0.463 | -- | 3.04 | 0.377 | 2.05 | 26.2 | 1238 | -- | -- |
| 29.02 | 0.251 | 12.8 | 0.346 | 0.107 | -0.151 | -- | -- | 0.267 | 2.67 | 25 | 9688 | -- | -- |
| 27.56 | 0.244 | 12.8 | 1.04 | -- | -0.436 | -- | 3.01 | 0.39 | -- | 25.67 | 1756 | -- | -- |
| 29.73 | 0.256 | 12.9 | 0.281 | 0.0956 | -- | -0.222 | -- | 0.208 | 3.53 | -- | -- | -- | -- |
| 29.86 | 0.256 | 12.9 | 0.284 | 0.0945 | -- | -- | -- | 0.21 | 2.81 | -- | -- | -- | -- |
| 29.59 | 0.253 | 12.8 | 0.508 | -- | -0.241 | -- | -- | 0.31 | -- | 11.22 | 27761 | -- | -- |
| 31.83 | 0.263 | 12.9 | -- | 0.114 | -0.055 | -- | -- | 0.193 | 2.8 | 25.59 | 8216 | -- | -- |
| 30.38 | 0.258 | 12.9 | 0.288 | -- | -- | -- | -- | 0.212 | -- | -- | -- | -- | -- |
| 31.99 | 0.265 | 12.9 | -- | 0.1 | -- | -- | -- | 0.178 | 2.83 | -- | -- | -- | -- |
| 31.3 | 0.261 | 12.9 | -- | -- | 0.161 | -- | -- | 0.118 | -- | 26.1 | 47520 | -- | -- |
| 32.57 | 0.266 | 12.9 | -- | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.05 | wind | 7 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 3 | 26.08 | wind | 7 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 5 | 26.10 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 2 |
| 10 | 26.19 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 11 | 26.20 | temperature | 25 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 18 | 26.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 23 | 26.33 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 4 |
| 30 | 26.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 9 |
| 31 | 26.37 | temperature | 25 | 1440 | > th | dose dependent | sin | 14 | NA |
| 54 | 26.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 78 | 26.44 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 89 | 26.45 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 114 | 26.49 | humidity | 90 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 185 | 26.62 | humidity | 90 | 1440 | > th | dose independent | rect. | 12 | 12 |
| 186 | 26.62 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 15 |
| 206 | 26.64 | humidity | 90 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 209 | 26.64 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 13 |
| 216 | 26.65 | humidity | 90 | 1440 | < th | dose independent | rect. | 19 | 2 |
| 228 | 26.66 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 229 | 26.66 | wind | 9 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 241 | 26.67 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 19 |
| 251 | 26.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 256 | 26.68 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 270 | 26.70 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 271 | 26.70 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 273 | 26.70 | wind | 9 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 306 | 26.73 | humidity | 80 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 310 | 26.73 | humidity | 80 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 317 | 26.74 | humidity | 80 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 382 | 26.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 383 | 26.78 | wind | 1 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 384 | 26.78 | wind | 9 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 391 | 26.79 | wind | 9 | 14400 | < th | dose independent | sin | 5 | NA |
| 393 | 26.79 | humidity | 80 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 413 | 26.80 | wind | 9 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 419 | 26.81 | humidity | 90 | 1440 | > th | dose independent | sin | 18 | NA |
| 429 | 26.81 | wind | 7 | 14400 | > th | dose dependent | sin | 3 | NA |
| 433 | 26.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 451 | 26.82 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 493 | 26.85 | wind | 9 | 14400 | > th | dose independent | sin | 6 | NA |
| 495 | 26.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 519 | 26.86 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 531 | 26.87 | radiation | 1 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 539 | 26.87 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 547 | 26.87 | humidity | 80 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 563 | 26.88 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 16 |
| 565 | 26.88 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 566 | 26.88 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 20 |
| 568 | 26.88 | humidity | 90 | 1440 | > th | dose dependent | rect. | 19 | 5 |
| 590 | 26.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 604 | 26.90 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 615 | 26.90 | wind | 9 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 629 | 26.90 | humidity | 90 | 1440 | > th | dose dependent | rect. | 14 | 10 |
| 631 | 26.90 | humidity | 90 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 675 | 26.92 | humidity | 90 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 682 | 26.92 | humidity | 90 | 1440 | > th | dose dependent | rect. | 16 | 8 |
| 741 | 26.94 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 757 | 26.95 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 761 | 26.95 | radiation | 1 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 764 | 26.95 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 771 | 26.95 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 794 | 26.95 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 19 |
| 820 | 26.96 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 834 | 26.96 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 845 | 26.96 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 876 | 26.97 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 891 | 26.97 | humidity | 90 | 1440 | > th | dose independent | rect. | 5 | 20 |
| 893 | 26.97 | humidity | 80 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 895 | 26.97 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 948 | 26.99 | temperature | 25 | 1440 | > th | dose independent | sin | 14 | NA |
| 973 | 26.99 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 20 |
| 974 | 26.99 | wind | 9 | 14400 | > th | dose independent | rect. | 22 | 22 |
| 985 | 26.99 | wind | 9 | 14400 | < th | dose dependent | rect. | 8 | 5 |