BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0255300 Os06g0255300|AY663851
(2698 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0255300 Conserved hypothetical protein 5224 0.0
>Os06g0255300 Conserved hypothetical protein
Length = 2698
Score = 5224 bits (13551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 2602/2698 (96%), Positives = 2602/2698 (96%)
Query: 1 GKKEEXXXXXXXXXXXXXXXRSEDEIDIFESIDKQRREEEMATWLTVVQNSSTSGLDPSV 60
GKKEE RSEDEIDIFESIDKQRREEEMATWLTVVQNSSTSGLDPSV
Sbjct: 1 GKKEEAAPVLDDDALNDLLARSEDEIDIFESIDKQRREEEMATWLTVVQNSSTSGLDPSV 60
Query: 61 MPSRLVTDDDLKSFCHAMKIYESSNIKSVKVVRRKGELGGLDTQHYGRGKRAREVRSYED 120
MPSRLVTDDDLKSFCHAMKIYESSNIKSVKVVRRKGELGGLDTQHYGRGKRAREVRSYED
Sbjct: 61 MPSRLVTDDDLKSFCHAMKIYESSNIKSVKVVRRKGELGGLDTQHYGRGKRAREVRSYED 120
Query: 121 QWTEEEFEKLCQVDSPDSPQPGGISRDADXXXXXXXXXXXXSSKEPEQAKKEPASSVGDS 180
QWTEEEFEKLCQVDSPDSPQPGGISRDAD SSKEPEQAKKEPASSVGDS
Sbjct: 121 QWTEEEFEKLCQVDSPDSPQPGGISRDADVPKVVKLEVPPESSKEPEQAKKEPASSVGDS 180
Query: 181 PPAKXXXXXXXXSDASLSPVTAPPNTGKQEAGTIIDGSSSAPTTTIHSVAPDVTIDSTAL 240
PPAK SDASLSPVTAPPNTGKQEAGTIIDGSSSAPTTTIHSVAPDVTIDSTAL
Sbjct: 181 PPAKRRRGRPRRSDASLSPVTAPPNTGKQEAGTIIDGSSSAPTTTIHSVAPDVTIDSTAL 240
Query: 241 SATGNPDVGTEIKGTTPDGTIKPVICTDNKGTASIAVLEGSNAKEVGIPAHSVHEPVXXX 300
SATGNPDVGTEIKGTTPDGTIKPVICTDNKGTASIAVLEGSNAKEVGIPAHSVHEPV
Sbjct: 241 SATGNPDVGTEIKGTTPDGTIKPVICTDNKGTASIAVLEGSNAKEVGIPAHSVHEPVSSS 300
Query: 301 XXXXXXXXXXRGRKTQAGETPRRRGRKPKSLAASAGDVILSPVVAVGSGEAYASSVVSSY 360
RGRKTQAGETPRRRGRKPKSLAASAGDVILSPVVAVGSGEAYASSVVSSY
Sbjct: 301 APHPPTPATSRGRKTQAGETPRRRGRKPKSLAASAGDVILSPVVAVGSGEAYASSVVSSY 360
Query: 361 PQGNVSSSHANAMAGLQKDTIIYKPAALLPEGVKGTLTPSGGDKDEMVKTPLAEDIYAGT 420
PQGNVSSSHANAMAGLQKDTIIYKPAALLPEGVKGTLTPSGGDKDEMVKTPLAEDIYAGT
Sbjct: 361 PQGNVSSSHANAMAGLQKDTIIYKPAALLPEGVKGTLTPSGGDKDEMVKTPLAEDIYAGT 420
Query: 421 VTTSGNANSQLPMIAHNENAGLVQGGTDQNLSVATPTIPVVSEGSTKISEVVVADKPAEK 480
VTTSGNANSQLPMIAHNENAGLVQGGTDQNLSVATPTIPVVSEGSTKISEVVVADKPAEK
Sbjct: 421 VTTSGNANSQLPMIAHNENAGLVQGGTDQNLSVATPTIPVVSEGSTKISEVVVADKPAEK 480
Query: 481 QGARRRRKKTSGTGSEDTGVSTRQRAASRRLYGIGTADIAGTDMSTGEKIGIVKEIDGSC 540
QGARRRRKKTSGTGSEDTGVSTRQRAASRRLYGIGTADIAGTDMSTGEKIGIVKEIDGSC
Sbjct: 481 QGARRRRKKTSGTGSEDTGVSTRQRAASRRLYGIGTADIAGTDMSTGEKIGIVKEIDGSC 540
Query: 541 QDTSKGLPNIISPSYEKSGYDSQPSTPIAVPINEAALPSGFSEAHATHSELHPARESISS 600
QDTSKGLPNIISPSYEKSGYDSQPSTPIAVPINEAALPSGFSEAHATHSELHPARESISS
Sbjct: 541 QDTSKGLPNIISPSYEKSGYDSQPSTPIAVPINEAALPSGFSEAHATHSELHPARESISS 600
Query: 601 VGHEKLAGAHLEAPPSVSFQAPVQHETRKDYVGVHSEVATTHPETITTHSSVNPVIDHKL 660
VGHEKLAGAHLEAPPSVSFQAPVQHETRKDYVGVHSEVATTHPETITTHSSVNPVIDHKL
Sbjct: 601 VGHEKLAGAHLEAPPSVSFQAPVQHETRKDYVGVHSEVATTHPETITTHSSVNPVIDHKL 660
Query: 661 ANVQFESHASLHTSGKDITTMPSEVDSGAPSKAPGRRRKGSAREPRTRSNSATAASERRA 720
ANVQFESHASLHTSGKDITTMPSEVDSGAPSKAPGRRRKGSAREPRTRSNSATAASERRA
Sbjct: 661 ANVQFESHASLHTSGKDITTMPSEVDSGAPSKAPGRRRKGSAREPRTRSNSATAASERRA 720
Query: 721 RLAGSKQPDDIKMAEMSGNPSTAVCSSTQQQEDNTLKAAHATGSVGEEQNNAENRVREVS 780
RLAGSKQPDDIKMAEMSGNPSTAVCSSTQQQEDNTLKAAHATGSVGEEQNNAENRVREVS
Sbjct: 721 RLAGSKQPDDIKMAEMSGNPSTAVCSSTQQQEDNTLKAAHATGSVGEEQNNAENRVREVS 780
Query: 781 MPAGILEAKLELTKQTDQAGHNSEQEQEMVSAAKSASANDEEHKVHEVHQIIADHNALPS 840
MPAGILEAKLELTKQTDQAGHNSEQEQEMVSAAKSASANDEEHKVHEVHQIIADHNALPS
Sbjct: 781 MPAGILEAKLELTKQTDQAGHNSEQEQEMVSAAKSASANDEEHKVHEVHQIIADHNALPS 840
Query: 841 SAQYTLQDKIDSSADAGLVPCDKIASVVIAVDDQDPSNASDKDAPASTEDDGNGLQSECV 900
SAQYTLQDKIDSSADAGLVPCDKIASVVIAVDDQDPSNASDKDAPASTEDDGNGLQSECV
Sbjct: 841 SAQYTLQDKIDSSADAGLVPCDKIASVVIAVDDQDPSNASDKDAPASTEDDGNGLQSECV 900
Query: 901 HVDLVLAKQDNTKVEDTQKSNQPAEQGESLEMTGSKFRSETRLEKTEETVDKSGGDNLPT 960
HVDLVLAKQDNTKVEDTQKSNQPAEQGESLEMTGSKFRSETRLEKTEETVDKSGGDNLPT
Sbjct: 901 HVDLVLAKQDNTKVEDTQKSNQPAEQGESLEMTGSKFRSETRLEKTEETVDKSGGDNLPT 960
Query: 961 IEKNDDSPIERSSPSADKIAQXXXXXXXXXXXXXXXXXSAMNSDGLQDVRNALSTHGLST 1020
IEKNDDSPIERSSPSADKIAQ SAMNSDGLQDVRNALSTHGLST
Sbjct: 961 IEKNDDSPIERSSPSADKIAQVAYGGEAGTETTTVEAVSAMNSDGLQDVRNALSTHGLST 1020
Query: 1021 NDITVASEEHRDPESHLXXXXXXXXXXXXXXXXXXNQSESACQSGEVTLEDTHATLDIQI 1080
NDITVASEEHRDPESHL NQSESACQSGEVTLEDTHATLDIQI
Sbjct: 1021 NDITVASEEHRDPESHLSGEVSMSGGSSELKLESLNQSESACQSGEVTLEDTHATLDIQI 1080
Query: 1081 PALIESEEKKSPGGDVHGSEEQHMHEVLHNTVDGSISPSNREQDKLQVHIDTNTDVDIPS 1140
PALIESEEKKSPGGDVHGSEEQHMHEVLHNTVDGSISPSNREQDKLQVHIDTNTDVDIPS
Sbjct: 1081 PALIESEEKKSPGGDVHGSEEQHMHEVLHNTVDGSISPSNREQDKLQVHIDTNTDVDIPS 1140
Query: 1141 SDKDHSTDIVLAGCQAPCDASGKDKLSTCDASGKDMAAPTDDDLNCLQSEDTVIPVADAK 1200
SDKDHSTDIVLAGCQAPCDASGKDKLSTCDASGKDMAAPTDDDLNCLQSEDTVIPVADAK
Sbjct: 1141 SDKDHSTDIVLAGCQAPCDASGKDKLSTCDASGKDMAAPTDDDLNCLQSEDTVIPVADAK 1200
Query: 1201 DETMLVKAIQNDEMSMGSSHGLPATIQSTDSDRLAEEGESAEITGSKFSCGMEQEKMEEP 1260
DETMLVKAIQNDEMSMGSSHGLPATIQSTDSDRLAEEGESAEITGSKFSCGMEQEKMEEP
Sbjct: 1201 DETMLVKAIQNDEMSMGSSHGLPATIQSTDSDRLAEEGESAEITGSKFSCGMEQEKMEEP 1260
Query: 1261 LDKSVTDNQTSSQINDGSNNMDSQKVDSSLQAADGGDLLVSRGTSVETTTAINTDASDES 1320
LDKSVTDNQTSSQINDGSNNMDSQKVDSSLQAADGGDLLVSRGTSVETTTAINTDASDES
Sbjct: 1261 LDKSVTDNQTSSQINDGSNNMDSQKVDSSLQAADGGDLLVSRGTSVETTTAINTDASDES 1320
Query: 1321 ISVSTQSVKEASTVEIGASTNDIAPACELRKDFESHVSGCVSKPVGLSELRLEELSQTKS 1380
ISVSTQSVKEASTVEIGASTNDIAPACELRKDFESHVSGCVSKPVGLSELRLEELSQTKS
Sbjct: 1321 ISVSTQSVKEASTVEIGASTNDIAPACELRKDFESHVSGCVSKPVGLSELRLEELSQTKS 1380
Query: 1381 VSQSIVANAEETSTRSDIETPAMDASESKSPESDVHELSERVEFMGPTPSANEKSNELHS 1440
VSQSIVANAEETSTRSDIETPAMDASESKSPESDVHELSERVEFMGPTPSANEKSNELHS
Sbjct: 1381 VSQSIVANAEETSTRSDIETPAMDASESKSPESDVHELSERVEFMGPTPSANEKSNELHS 1440
Query: 1441 QELVKMISAAETASTEGHREKDTCEVDHKIDCTIFSPIGDQDTRNRIDGDTDCGVPSCQR 1500
QELVKMISAAETASTEGHREKDTCEVDHKIDCTIFSPIGDQDTRNRIDGDTDCGVPSCQR
Sbjct: 1441 QELVKMISAAETASTEGHREKDTCEVDHKIDCTIFSPIGDQDTRNRIDGDTDCGVPSCQR 1500
Query: 1501 NAAFDSENEVSAEINLTGSQAPCDAPNKATPAPTEDDHNGQESEDTVIGAEQGTVEVEAM 1560
NAAFDSENEVSAEINLTGSQAPCDAPNKATPAPTEDDHNGQESEDTVIGAEQGTVEVEAM
Sbjct: 1501 NAAFDSENEVSAEINLTGSQAPCDAPNKATPAPTEDDHNGQESEDTVIGAEQGTVEVEAM 1560
Query: 1561 QIDGISKSYSSDSHATLQSSDSNQLVNSDSKFESSKKHDKTDETSNESRGDNPTHSCTND 1620
QIDGISKSYSSDSHATLQSSDSNQLVNSDSKFESSKKHDKTDETSNESRGDNPTHSCTND
Sbjct: 1561 QIDGISKSYSSDSHATLQSSDSNQLVNSDSKFESSKKHDKTDETSNESRGDNPTHSCTND 1620
Query: 1621 DSHDKNLVGCSPSEDLNEDNSAQLADGDDLVGSKDTTAAHASGLKELTSGNYVASSSSHV 1680
DSHDKNLVGCSPSEDLNEDNSAQLADGDDLVGSKDTTAAHASGLKELTSGNYVASSSSHV
Sbjct: 1621 DSHDKNLVGCSPSEDLNEDNSAQLADGDDLVGSKDTTAAHASGLKELTSGNYVASSSSHV 1680
Query: 1681 VQDVTSISKMESVQAGSEEIYHGYSDETIHSARIKPVVGTEITENASVASAPVITIQPDI 1740
VQDVTSISKMESVQAGSEEIYHGYSDETIHSARIKPVVGTEITENASVASAPVITIQPDI
Sbjct: 1681 VQDVTSISKMESVQAGSEEIYHGYSDETIHSARIKPVVGTEITENASVASAPVITIQPDI 1740
Query: 1741 ETEAGVTASLTVLEGSIAEEVDTQVESGHDLVTSTAPLSPAPLPGESHACTDVSCPVAVE 1800
ETEAGVTASLTVLEGSIAEEVDTQVESGHDLVTSTAPLSPAPLPGESHACTDVSCPVAVE
Sbjct: 1741 ETEAGVTASLTVLEGSIAEEVDTQVESGHDLVTSTAPLSPAPLPGESHACTDVSCPVAVE 1800
Query: 1801 VSETKLESANHTASQLGAACTETPNALLNTLIPALPESEETKLSGSDTDGKTIMAELASS 1860
VSETKLESANHTASQLGAACTETPNALLNTLIPALPESEETKLSGSDTDGKTIMAELASS
Sbjct: 1801 VSETKLESANHTASQLGAACTETPNALLNTLIPALPESEETKLSGSDTDGKTIMAELASS 1860
Query: 1861 SDEHDKVHEVGNETGDDNKLPSSVAEDAVQGEIDGSADMDSQIIAGSSEAEINNSTVATI 1920
SDEHDKVHEVGNETGDDNKLPSSVAEDAVQGEIDGSADMDSQIIAGSSEAEINNSTVATI
Sbjct: 1861 SDEHDKVHEVGNETGDDNKLPSSVAEDAVQGEIDGSADMDSQIIAGSSEAEINNSTVATI 1920
Query: 1921 ADSQIPFDPSDKDTLAEDGNGLQREGTTVDVTGSKEDDMEAEEKQMDDSHLPAALQSTES 1980
ADSQIPFDPSDKDTLAEDGNGLQREGTTVDVTGSKEDDMEAEEKQMDDSHLPAALQSTES
Sbjct: 1921 ADSQIPFDPSDKDTLAEDGNGLQREGTTVDVTGSKEDDMEAEEKQMDDSHLPAALQSTES 1980
Query: 1981 SQPTEHAAPTQDDGNGLQCEGTTVDVSGSKEDIMEVEEKLIDDISGSPSSHLPVALKSTE 2040
SQPTEHAAPTQDDGNGLQCEGTTVDVSGSKEDIMEVEEKLIDDISGSPSSHLPVALKSTE
Sbjct: 1981 SQPTEHAAPTQDDGNGLQCEGTTVDVSGSKEDIMEVEEKLIDDISGSPSSHLPVALKSTE 2040
Query: 2041 SNQPAEHAVPAEDDGDGLQSEGTAVDVVDSKKDDMEVEEKQIDISRGSSSFLPGALESAE 2100
SNQPAEHAVPAEDDGDGLQSEGTAVDVVDSKKDDMEVEEKQIDISRGSSSFLPGALESAE
Sbjct: 2041 SNQPAEHAVPAEDDGDGLQSEGTAVDVVDSKKDDMEVEEKQIDISRGSSSFLPGALESAE 2100
Query: 2101 LNQPAEHTAPTEDHGNCLQSEGTAVDVPCSKEDNMEVEDQFDGISRGPSSFSPDTLESAE 2160
LNQPAEHTAPTEDHGNCLQSEGTAVDVPCSKEDNMEVEDQFDGISRGPSSFSPDTLESAE
Sbjct: 2101 LNQPAEHTAPTEDHGNCLQSEGTAVDVPCSKEDNMEVEDQFDGISRGPSSFSPDTLESAE 2160
Query: 2161 LNQAAEHAAPTEDDGNGPQSEGTSVDVAGSKEDNIEVEEKIDDISRGSSSHLPDVLQSTP 2220
LNQAAEHAAPTEDDGNGPQSEGTSVDVAGSKEDNIEVEEKIDDISRGSSSHLPDVLQSTP
Sbjct: 2161 LNQAAEHAAPTEDDGNGPQSEGTSVDVAGSKEDNIEVEEKIDDISRGSSSHLPDVLQSTP 2220
Query: 2221 NQRAEQECLXXXXXXXXXXXXXHAPLSGPKFTCVKELEKADETLETSDAQVADEVCLQTN 2280
NQRAEQECL HAPLSGPKFTCVKELEKADETLETSDAQVADEVCLQTN
Sbjct: 2221 NQRAEQECLDNSDDVNTSVVSSHAPLSGPKFTCVKELEKADETLETSDAQVADEVCLQTN 2280
Query: 2281 DGAHNMASGSCSTLEDKNEDSSAQIADCEDLLLRKGTTVDDLDGCVEGHSGLSTHSNDEV 2340
DGAHNMASGSCSTLEDKNEDSSAQIADCEDLLLRKGTTVDDLDGCVEGHSGLSTHSNDEV
Sbjct: 2281 DGAHNMASGSCSTLEDKNEDSSAQIADCEDLLLRKGTTVDDLDGCVEGHSGLSTHSNDEV 2340
Query: 2341 RNLVEIVKGMNDTTAGSEVHVDPESHVSDEVSMPVAPSELKVELKNQSEPACQFGAVIVE 2400
RNLVEIVKGMNDTTAGSEVHVDPESHVSDEVSMPVAPSELKVELKNQSEPACQFGAVIVE
Sbjct: 2341 RNLVEIVKGMNDTTAGSEVHVDPESHVSDEVSMPVAPSELKVELKNQSEPACQFGAVIVE 2400
Query: 2401 ESNVSLGIQTPALAESEEMTSGGFMHGKEVCASEQTNIGAAAEPASTKDDHDMHEVDKEI 2460
ESNVSLGIQTPALAESEEMTSGGFMHGKEVCASEQTNIGAAAEPASTKDDHDMHEVDKEI
Sbjct: 2401 ESNVSLGIQTPALAESEEMTSGGFMHGKEVCASEQTNIGAAAEPASTKDDHDMHEVDKEI 2460
Query: 2461 VHCTISSPIGDQENLQGNIDGKMDVGLAACQTESDFVSGNDHSRETDLAGSQAPYDASDK 2520
VHCTISSPIGDQENLQGNIDGKMDVGLAACQTESDFVSGNDHSRETDLAGSQAPYDASDK
Sbjct: 2461 VHCTISSPIGDQENLQGNIDGKMDVGLAACQTESDFVSGNDHSRETDLAGSQAPYDASDK 2520
Query: 2521 EDTAADLIGPKQATLEIEKMQIDGIPEGPSSVPAVLQLTDSNQPAEQERLENSDSKFAST 2580
EDTAADLIGPKQATLEIEKMQIDGIPEGPSSVPAVLQLTDSNQPAEQERLENSDSKFAST
Sbjct: 2521 EDTAADLIGPKQATLEIEKMQIDGIPEGPSSVPAVLQLTDSNQPAEQERLENSDSKFAST 2580
Query: 2581 KDQGRVDGTSNLSGGDNAKCSLTNDDSQTVNLVGYSPSEDSNDDDSVQAADSDGVLGNKE 2640
KDQGRVDGTSNLSGGDNAKCSLTNDDSQTVNLVGYSPSEDSNDDDSVQAADSDGVLGNKE
Sbjct: 2581 KDQGRVDGTSNLSGGDNAKCSLTNDDSQTVNLVGYSPSEDSNDDDSVQAADSDGVLGNKE 2640
Query: 2641 GTDDVISAACTDDVSMLKTESIDRHGSDEVDHSTAPSAAIKQESGTEVTCDASVPVSE 2698
GTDDVISAACTDDVSMLKTESIDRHGSDEVDHSTAPSAAIKQESGTEVTCDASVPVSE
Sbjct: 2641 GTDDVISAACTDDVSMLKTESIDRHGSDEVDHSTAPSAAIKQESGTEVTCDASVPVSE 2698
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.303 0.122 0.331
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 93,750,330
Number of extensions: 4283177
Number of successful extensions: 11836
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 11655
Number of HSP's successfully gapped: 2
Length of query: 2698
Length of database: 17,035,801
Length adjustment: 118
Effective length of query: 2580
Effective length of database: 10,874,549
Effective search space: 28056336420
Effective search space used: 28056336420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 165 (68.2 bits)