BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0255300 Os06g0255300|AY663851
         (2698 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28290.1  | chr2:12056771-12072950 FORWARD LENGTH=3575         127   6e-29

>AT2G28290.1 | chr2:12056771-12072950 FORWARD LENGTH=3575
          Length = 3574

 Score =  127 bits (320), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/147 (53%), Positives = 93/147 (63%), Gaps = 6/147 (4%)

Query: 2    KKEEXXXXXXXXXXXXXXXRSEDEIDIFESIDKQRREEEMATWLTVVQNSSTSGLD--PS 59
            KKEE               R E EIDIFESIDKQR+E EM TW T+V    +      PS
Sbjct: 1248 KKEEDAPVLDDDALNDLIARRESEIDIFESIDKQRKENEMETWNTLVHGPGSDSFAHIPS 1307

Query: 60   VMPSRLVTDDDLKSFCHAMKIYESSNI---KSVKVVRRKGELGGLDTQHYGRGKRAREVR 116
            + PSRLVT+DDLK     MK+ +   +    +V + R+ G +GGLDT  YGRGKRAREVR
Sbjct: 1308 I-PSRLVTEDDLKLLYETMKLNDVPMVAKESTVGMKRKDGSMGGLDTHQYGRGKRAREVR 1366

Query: 117  SYEDQWTEEEFEKLCQVDSPDSPQPGG 143
            SYE++ TEEEFEKLCQ +SPDSPQ  G
Sbjct: 1367 SYEEKLTEEEFEKLCQTESPDSPQGKG 1393



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.303    0.122    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 58,504,077
Number of extensions: 2644879
Number of successful extensions: 7070
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 7049
Number of HSP's successfully gapped: 11
Length of query: 2698
Length of database: 11,106,569
Length adjustment: 116
Effective length of query: 2582
Effective length of database: 7,926,313
Effective search space: 20465740166
Effective search space used: 20465740166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 121 (51.2 bits)