Os06g0254300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Caleosin related family protein.
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Os06g0254300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Caleosin related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.55 | 0.457 | 12.5 | -2.01 | 2.34 | 1.23 | 1.46 | -2.34 | -0.901 | 8.55 | 21.86 | 267 | -- | -- |
| 97.64 | 0.46 | 12.5 | -1.59 | 2.35 | 1.13 | 1.69 | -- | -0.77 | 8.47 | 23 | 245 | -- | -- |
| 100.84 | 0.468 | 12.6 | -2.12 | 2.41 | 1.21 | -- | -3.1 | -0.951 | 8.68 | 21.45 | 406 | -- | -- |
| 105.44 | 0.478 | 12.5 | -1.5 | 2.18 | 1.02 | -- | -- | -0.75 | 8.54 | 22.13 | 122 | -- | -- |
| 341.53 | 0.865 | 12.6 | -1.79 | -- | 1.33 | -- | -1.45 | -0.862 | -- | 21.45 | 406 | -- | -- |
| 117.43 | 0.508 | 12.5 | -1.35 | 2.11 | -- | 1.3 | -- | -0.604 | 9.24 | -- | -- | -- | -- |
| 123.44 | 0.52 | 12.5 | -1.31 | 2.11 | -- | -- | -- | -0.602 | 9.26 | -- | -- | -- | -- |
| 340.02 | 0.863 | 12.6 | -1.62 | -- | 1.72 | -- | -- | -0.819 | -- | 10.96 | 3 | -- | -- |
| 160.05 | 0.589 | 12.4 | -- | 2.2 | 0.768 | -- | -- | -0.425 | 8.85 | 27.1 | 183 | -- | -- |
| 381.73 | 0.913 | 12.5 | -1.32 | -- | -- | -- | -- | -0.593 | -- | -- | -- | -- | -- |
| 168.42 | 0.607 | 12.4 | -- | 2.11 | -- | -- | -- | -0.457 | 9.31 | -- | -- | -- | -- |
| 390.89 | 0.921 | 12.5 | -- | -- | -1.11 | -- | -- | -0.359 | -- | 24.2 | 685 | -- | -- |
| 427.35 | 0.965 | 12.5 | -- | -- | -- | -- | -- | -0.447 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.50 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 15 | 6 |
| 5 | 89.73 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 19 |
| 7 | 90.28 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 7 |
| 10 | 90.60 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 20 | 21 |
| 24 | 91.47 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 45 | 92.31 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 16 |
| 50 | 92.52 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 15 |
| 62 | 92.77 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 15 | 5 |
| 65 | 92.82 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 8 |
| 67 | 92.89 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 20 |
| 71 | 93.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 18 |
| 80 | 93.36 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 92 | 93.54 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 116 | 93.89 | temperature | 25.0 | 10 | > th | dose dependent | sin | 18 | NA |
| 121 | 93.94 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 123 | 93.96 | temperature | 30.0 | 720 | < th | dose independent | rect. | 14 | 14 |
| 127 | 94.07 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 16 | 7 |
| 132 | 94.14 | temperature | 25.0 | 90 | > th | dose dependent | sin | 20 | NA |
| 134 | 94.20 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 135 | 94.20 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 12 |
| 137 | 94.20 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 140 | 94.22 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 145 | 94.28 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 147 | 94.31 | humidity | 70.0 | 270 | > th | dose independent | rect. | 15 | 5 |
| 150 | 94.33 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 152 | 94.34 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 154 | 94.35 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 164 | 94.41 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 10 |
| 167 | 94.44 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 17 | 6 |
| 172 | 94.46 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 11 | 7 |
| 176 | 94.47 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 177 | 94.47 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 19 |
| 180 | 94.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 195 | 94.61 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 202 | 94.62 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 209 | 94.68 | temperature | 30.0 | 720 | < th | dose independent | rect. | 22 | 21 |
| 226 | 94.73 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 231 | 94.75 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 239 | 94.82 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 253 | 94.89 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 254 | 94.89 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 258 | 94.91 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 265 | 94.94 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 300 | 95.06 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 318 | 95.17 | temperature | 30.0 | 720 | < th | dose independent | sin | 22 | NA |
| 321 | 95.18 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 18 |
| 337 | 95.23 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 7 |
| 354 | 95.28 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 20 |
| 392 | 95.39 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 420 | 95.46 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 12 | 17 |
| 422 | 95.47 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 15 |
| 437 | 95.52 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 12 | 14 |
| 451 | 95.55 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 15 |
| 460 | 95.57 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 461 | 95.58 | radiation | 1.0 | 30 | > th | dose independent | sin | 18 | NA |
| 467 | 95.59 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 503 | 95.66 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 517 | 95.71 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 537 | 95.76 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 547 | 95.78 | temperature | 25.0 | 270 | > th | dose dependent | sin | 0 | NA |
| 591 | 95.84 | humidity | 60.0 | 10 | > th | dose dependent | sin | 18 | NA |
| 604 | 95.88 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 16 |
| 608 | 95.88 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 666 | 95.94 | temperature | 20.0 | 270 | > th | dose dependent | no | NA | NA |
| 684 | 95.97 | temperature | 30.0 | 720 | > th | dose independent | rect. | 12 | 6 |
| 691 | 95.99 | radiation | 1.0 | 30 | < th | dose independent | sin | 19 | NA |
| 694 | 95.99 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 705 | 96.02 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 737 | 96.07 | temperature | 30.0 | 720 | > th | dose independent | rect. | 14 | 4 |
| 782 | 96.12 | temperature | 30.0 | 720 | < th | dose independent | sin | 18 | NA |
| 783 | 96.12 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 803 | 96.15 | humidity | 70.0 | 90 | > th | dose independent | rect. | 13 | 10 |
| 829 | 96.18 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 830 | 96.18 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 835 | 96.19 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 934 | 96.25 | temperature | 30.0 | 720 | > th | dose dependent | no | NA | NA |