BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0254300 Os06g0254300|AK101337
(157 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G70670.1 | chr1:26644830-26645970 FORWARD LENGTH=196 127 4e-30
AT1G70680.1 | chr1:26647341-26648541 FORWARD LENGTH=193 120 3e-28
AT1G23240.1 | chr1:8252894-8254494 REVERSE LENGTH=211 114 3e-26
AT2G33380.1 | chr2:14144984-14146374 REVERSE LENGTH=237 108 1e-24
AT4G26740.1 | chr4:13473791-13475278 REVERSE LENGTH=246 103 3e-23
AT5G55240.1 | chr5:22405963-22407158 FORWARD LENGTH=244 103 4e-23
AT5G29560.1 | chr5:11190543-11191963 REVERSE LENGTH=221 100 5e-22
AT1G23250.1 | chr1:8255233-8256770 REVERSE LENGTH=206 95 2e-20
>AT1G70670.1 | chr1:26644830-26645970 FORWARD LENGTH=196
Length = 195
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 80/112 (71%)
Query: 34 IYIKNIYKGMHGSDTGALDAKGRFVPAKFEEIFSKHAKNRPDALTSLEVKEMILANRDPD 93
I +KNI+ HGSD+G D GRFV +KFEEIF+KHA DALT+ E+K+++ AN++P+
Sbjct: 80 IEVKNIHLAKHGSDSGVYDKDGRFVASKFEEIFTKHAHTHRDALTNEELKQLLKANKEPN 139
Query: 94 DPQSWAAPIQEWGLIYGLASDKNGYFHKDSVRGIYDGSVFVKLEEERASSQS 145
D + W A EW +++ L DKNG HKD+VR YDGS+F KLE++R+S S
Sbjct: 140 DRKGWLAGYTEWKVLHYLCKDKNGLLHKDTVRAAYDGSLFEKLEKQRSSKTS 191
>AT1G70680.1 | chr1:26647341-26648541 FORWARD LENGTH=193
Length = 192
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 77/109 (70%)
Query: 34 IYIKNIYKGMHGSDTGALDAKGRFVPAKFEEIFSKHAKNRPDALTSLEVKEMILANRDPD 93
I +KN+ G+H SD+G D GRFV +KFEEIF+KHA DALTS E+KE++ ANR+P+
Sbjct: 81 IEVKNVRLGIHSSDSGVYDKDGRFVASKFEEIFAKHAHTHRDALTSKELKELLKANREPN 140
Query: 94 DPQSWAAPIQEWGLIYGLASDKNGYFHKDSVRGIYDGSVFVKLEEERAS 142
D + EW ++Y L DK+G HK+ VR +YDGS+F +LE++R+S
Sbjct: 141 DCKGGILAFGEWKVLYNLCKDKSGLLHKEIVRAVYDGSLFEQLEKQRSS 189
>AT1G23240.1 | chr1:8252894-8254494 REVERSE LENGTH=211
Length = 210
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 72/108 (66%)
Query: 30 PHLSIYIKNIYKGMHGSDTGALDAKGRFVPAKFEEIFSKHAKNRPDALTSLEVKEMILAN 89
P I +KN + MHGSDT D GRFV +KFEEIF+KHA+ DALT+ E+++M+ N
Sbjct: 87 PLFPIDVKNSHLCMHGSDTDVYDDDGRFVESKFEEIFNKHARTHKDALTAEEIQKMLKTN 146
Query: 90 RDPDDPQSWAAPIQEWGLIYGLASDKNGYFHKDSVRGIYDGSVFVKLE 137
RDP D W + EW +++ LA DKNG + SVR IYDGS+F +LE
Sbjct: 147 RDPFDITGWLSDYGEWKILHTLAQDKNGLLSEKSVRAIYDGSLFHQLE 194
>AT2G33380.1 | chr2:14144984-14146374 REVERSE LENGTH=237
Length = 236
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 80/133 (60%)
Query: 12 IIDQILFPYSNVQKDAPLPHLSIYIKNIYKGMHGSDTGALDAKGRFVPAKFEEIFSKHAK 71
++ + F Y + P P L +YI NI+K HGSD+ D +GR+VP E IFSK+A
Sbjct: 101 LLINLAFSYVTLPSWVPSPLLPVYIDNIHKAKHGSDSSTYDTEGRYVPVNLENIFSKYAL 160
Query: 72 NRPDALTSLEVKEMILANRDPDDPQSWAAPIQEWGLIYGLASDKNGYFHKDSVRGIYDGS 131
D L+ EV + NR DP W + EW L+Y LA D++G+ K++VRG +DGS
Sbjct: 161 TVKDKLSFKEVWNVTEGNRMAIDPFGWLSNKVEWILLYILAKDEDGFLSKEAVRGCFDGS 220
Query: 132 VFVKLEEERASSQ 144
+F ++ +ERA+S+
Sbjct: 221 LFEQIAKERANSR 233
>AT4G26740.1 | chr4:13473791-13475278 REVERSE LENGTH=246
Length = 245
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 70/119 (58%)
Query: 15 QILFPYSNVQKDAPLPHLSIYIKNIYKGMHGSDTGALDAKGRFVPAKFEEIFSKHAKNRP 74
+ Y+ + P P IYI NI+K HGSD+ D +GRF+P E IFSK+AK P
Sbjct: 109 NLTLSYATLPGWLPSPFFPIYIHNIHKSKHGSDSKTYDNEGRFMPVNLELIFSKYAKTLP 168
Query: 75 DALTSLEVKEMILANRDPDDPQSWAAPIQEWGLIYGLASDKNGYFHKDSVRGIYDGSVF 133
D L+ E+ EM NRD D W A EWGL+Y LA D+ G+ K+++R +DGS+F
Sbjct: 169 DKLSLGELWEMTEGNRDAWDIFGWIAGKIEWGLLYLLARDEEGFLSKEAIRRCFDGSLF 227
>AT5G55240.1 | chr5:22405963-22407158 FORWARD LENGTH=244
Length = 243
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 71/119 (59%)
Query: 15 QILFPYSNVQKDAPLPHLSIYIKNIYKGMHGSDTGALDAKGRFVPAKFEEIFSKHAKNRP 74
I Y+ + P P IYI NI+K HGSD+ D +GR+ PA E +FSK+A+ P
Sbjct: 108 NIALSYATLPGWLPSPFFPIYIHNIHKAKHGSDSKTYDNEGRYTPANLELMFSKYARTIP 167
Query: 75 DALTSLEVKEMILANRDPDDPQSWAAPIQEWGLIYGLASDKNGYFHKDSVRGIYDGSVF 133
D L+ E+ +M NRD D W A EWG++Y LASD+ G+ K+++R +DGS+F
Sbjct: 168 DKLSLGELWDMTEGNRDAFDFFGWLASKVEWGVLYALASDEEGFLSKEAIRRCFDGSLF 226
>AT5G29560.1 | chr5:11190543-11191963 REVERSE LENGTH=221
Length = 220
Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 19/135 (14%)
Query: 12 IIDQILFPYSNVQKDAPLPHLSIYIKNIYKGMHGSDTGALDAKGRFVPAKFEEIFSKHAK 71
II + Y+ + P P IYIKNI++ HGSDT D +GR++PA E +FSK+A+
Sbjct: 104 IIVHLTMSYATLPTWMPSPTFPIYIKNIHRAKHGSDTSTYDTEGRYIPANLENMFSKYAR 163
Query: 72 NRPDALTSLEVKEMILANRDPDDPQSWAAPIQEWGLIYGLASDKNGYFHKDSVRGIYDGS 131
PD LT AA EWG++Y LA D+NG+ K++VR +DGS
Sbjct: 164 TVPDKLT-------------------LAASKMEWGVLYFLAKDENGHLSKEAVRRCFDGS 204
Query: 132 VFVKLEEERASSQST 146
+F + RAS++ T
Sbjct: 205 LFDYCAKARASTKKT 219
>AT1G23250.1 | chr1:8255233-8256770 REVERSE LENGTH=206
Length = 205
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 48 TGALDAKGRFVPAKFEEIFSKHAKNRPDALTSLEVKEMILANRDPDDPQSWAAPIQEWGL 107
T D GRFV +KFEEIF+KHA+ DALT+ E+K+M+ NR+P D W + EW +
Sbjct: 101 TDVYDKDGRFVESKFEEIFNKHARTHKDALTAKEIKQMLKTNREPYDFIGWLSDFIEWKI 160
Query: 108 IYGLASDKNGYFHKDSVRGIYDGSVFVKLE 137
++ LA D NG +D+VRG+YDGS+F +LE
Sbjct: 161 LHTLAQD-NGLLTEDAVRGVYDGSLFQQLE 189
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,639,039
Number of extensions: 152035
Number of successful extensions: 325
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 8
Length of query: 157
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 67
Effective length of database: 8,639,129
Effective search space: 578821643
Effective search space used: 578821643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)