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Os06g0244100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.67 (0.0263) R2 : 0.743
β1 : 0.91 (0.0963) R2dD : 0.0522 R2D : 0.0106
β2 : 1.1 (0.0638) R2dC : 0.177 R2C : 0.252
β3 : -1.89 (0.0696) R2dE : 0.433 R2E : 0.482
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.477 (0.0564) R2dN8 : 0.0544 R2N8 : -0.00559
σ : 0.492
deviance : 111.46
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_____
C
peak time of C : 13.2
E
wheather : precipitation
threshold : 0.331
memory length : 277
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.82
open length of G : 2.93

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
96.83 0.462 9.67 0.978 1.09 -1.97 -1.88 -0.0015 0.487 12.8 0.3327 279 2.87 2.83
96.8 0.458 9.67 0.978 1.09 -1.97 -1.88 -- 0.486 12.8 0.4016 280 2.86 2.86
111.45 0.492 9.67 0.957 1.11 -1.9 -- 0.212 0.49 13.1 0.001316 275 2.87 2.93
111.46 0.492 9.67 0.91 1.1 -1.89 -- -- 0.477 13.2 0.331 277 2.82 2.93
178.91 0.623 9.68 0.956 -- -2.09 -- 0.0191 0.503 -- 0.5 256 2.72 3.03
190.78 0.648 9.73 0.877 2 -- -1.23 -- 0.354 15.9 -- -- -- --
194.98 0.654 9.74 0.86 2 -- -- -- 0.348 16 -- -- -- --
175.33 0.617 9.7 0.909 -- -2.09 -- -- 0.491 -- 0.4695 277 2.37 3
133.23 0.538 9.7 -- 1.1 -1.93 -- -- 0.383 13.1 0.3609 270 2.87 3.06
413.66 0.95 9.73 0.778 -- -- -- -- 0.294 -- -- -- -- --
214.48 0.685 9.76 -- 1.99 -- -- -- 0.252 16 -- -- -- --
196.6 0.653 9.71 -- -- -2.09 -- -- 0.387 -- 0.4432 274 2.34 3.13
429.63 0.967 9.75 -- -- -- -- -- 0.208 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 98.19 precipitation 0.1 270 < th dose independent rect. 3 3
2 98.19 precipitation 0.1 270 < th dose dependent rect. 3 3
3 99.55 wind 5.0 270 < th dose independent rect. 3 3
5 99.59 precipitation 0.1 270 < th dose independent rect. 2 5
6 99.59 precipitation 0.1 270 < th dose dependent rect. 2 5
7 99.61 wind 9.0 270 < th dose dependent rect. 3 3
9 100.17 temperature 10.0 270 > th dose independent rect. 3 3
11 100.17 temperature 30.0 270 < th dose independent rect. 3 3
12 100.17 humidity 50.0 270 > th dose independent rect. 3 3
15 100.17 atmosphere 995.0 270 > th dose independent rect. 3 3
16 100.17 atmosphere 1010.0 270 < th dose independent rect. 3 3
18 100.17 radiation 20.0 270 < th dose independent rect. 3 3
21 100.17 wind 9.0 270 < th dose independent rect. 6 21
22 100.17 temperature 10.0 270 > th dose independent rect. 6 21
23 100.27 radiation 30.0 270 < th dose dependent rect. 2 5
25 100.46 wind 7.0 270 < th dose independent rect. 2 5
27 100.68 radiation 40.0 270 < th dose dependent rect. 3 3
29 100.75 radiation 20.0 270 < th dose independent rect. 2 5
32 100.90 humidity 70.0 270 > th dose independent rect. 2 5
33 101.08 wind 9.0 270 < th dose independent rect. 7 19
37 101.18 temperature 10.0 270 > th dose independent rect. 2 5
39 101.18 temperature 30.0 270 < th dose independent rect. 2 5
40 101.18 humidity 50.0 270 > th dose independent rect. 2 5
42 101.18 atmosphere 995.0 270 > th dose independent rect. 2 5
43 101.18 atmosphere 1015.0 270 < th dose independent rect. 2 5
45 101.18 temperature 10.0 270 > th dose independent rect. 7 19
48 101.53 wind 9.0 270 < th dose dependent rect. 2 5
58 103.24 precipitation 0.1 270 < th dose independent rect. 7 19
59 103.24 precipitation 0.1 270 < th dose dependent rect. 7 19
91 103.96 precipitation 0.1 270 < th dose independent rect. 6 21
92 103.96 precipitation 0.1 270 < th dose dependent rect. 6 21
94 104.16 humidity 50.0 270 > th dose dependent rect. 3 3
98 104.72 temperature 10.0 270 > th dose dependent rect. 3 3
108 105.48 humidity 50.0 270 > th dose dependent rect. 2 5
119 106.24 atmosphere 995.0 270 > th dose independent rect. 7 19
128 107.25 temperature 10.0 270 > th dose dependent rect. 2 5
169 108.98 atmosphere 995.0 270 > th dose independent rect. 6 21
254 111.73 precipitation 0.1 270 < th dose independent rect. 14 16
255 111.73 precipitation 0.1 270 < th dose dependent rect. 14 16
271 111.83 precipitation 0.1 270 < th dose independent rect. 6 8
272 111.83 precipitation 0.1 270 < th dose dependent rect. 6 8
276 111.98 temperature 10.0 270 > th dose independent rect. 6 8
277 111.98 atmosphere 995.0 270 > th dose independent rect. 6 8
278 111.98 atmosphere 1015.0 270 < th dose independent rect. 6 8
279 111.98 temperature 10.0 270 > th dose independent rect. 14 16
297 112.42 wind 9.0 270 < th dose independent rect. 6 8
304 112.77 atmosphere 1015.0 270 < th dose independent rect. 7 18
312 112.99 precipitation 0.1 270 < th dose independent rect. 13 18
313 112.99 precipitation 0.1 270 < th dose dependent rect. 13 18
315 113.18 precipitation 0.1 270 < th dose independent rect. 7 6
316 113.18 precipitation 0.1 270 < th dose dependent rect. 7 6
317 113.22 wind 9.0 270 < th dose independent rect. 14 16
318 113.23 temperature 10.0 270 > th dose independent rect. 7 6
319 113.23 atmosphere 995.0 270 > th dose independent rect. 7 6
320 113.23 atmosphere 1015.0 270 < th dose independent rect. 7 6
321 113.23 temperature 10.0 270 > th dose independent rect. 13 18
323 113.38 wind 1.0 270 > th dose independent rect. 7 18
324 113.40 wind 9.0 270 < th dose independent rect. 7 6
360 114.00 radiation 40.0 270 < th dose independent rect. 14 16
365 114.05 humidity 50.0 270 > th dose independent rect. 7 6
369 114.20 wind 1.0 270 > th dose independent rect. 1 6
370 114.20 wind 9.0 270 < th dose independent rect. 13 18
400 114.45 humidity 50.0 270 > th dose independent rect. 6 8
403 114.50 precipitation 0.1 270 < th dose independent rect. 2 15
404 114.50 precipitation 0.1 270 < th dose dependent rect. 2 15
437 115.03 radiation 1.0 270 > th dose independent rect. 7 6
463 115.34 wind 9.0 270 < th dose independent rect. 17 9
465 115.43 precipitation 0.1 10 < th dose independent rect. 4 5
466 115.43 precipitation 0.1 10 < th dose dependent rect. 4 5
471 115.53 wind 7.0 10 < th dose independent rect. 4 5
484 115.62 radiation 1.0 270 < th dose independent rect. 3 9
500 115.70 atmosphere 1015.0 270 < th dose dependent rect. 3 3
503 115.72 radiation 10.0 270 < th dose independent rect. 17 9
508 115.80 atmosphere 995.0 270 > th dose independent rect. 17 9
516 115.86 wind 9.0 10 < th dose independent rect. 9 19
524 116.01 temperature 10.0 270 > th dose independent rect. 17 9
528 116.01 temperature 10.0 270 > th dose independent rect. 2 15
529 116.01 atmosphere 1015.0 270 < th dose independent rect. 2 15
543 116.25 radiation 40.0 270 < th dose dependent rect. 17 9
572 116.45 radiation 1.0 270 < th dose dependent rect. 3 14
645 117.30 humidity 50.0 270 > th dose independent rect. 18 8
654 117.35 wind 9.0 270 < th dose independent rect. 2 15
663 117.42 wind 1.0 270 > th dose independent rect. 7 6
668 117.46 precipitation 0.1 270 < th dose independent rect. 17 9
669 117.46 precipitation 0.1 270 < th dose dependent rect. 17 9
675 117.53 wind 9.0 10 < th dose independent rect. 8 21
740 117.95 wind 9.0 10 < th dose dependent rect. 5 3
770 118.51 atmosphere 995.0 270 > th dose independent rect. 13 18
772 118.52 humidity 50.0 270 > th dose independent rect. 14 16
786 118.71 atmosphere 995.0 270 > th dose dependent rect. 3 3
827 119.08 temperature 10.0 10 > th dose dependent rect. 5 3
861 119.32 atmosphere 995.0 270 > th dose independent rect. 14 16
933 120.28 precipitation 0.1 10 < th dose independent rect. 14 19
935 120.28 precipitation 0.1 10 < th dose dependent rect. 14 19
938 120.36 humidity 50.0 270 > th dose dependent rect. 18 8
986 120.77 temperature 10.0 270 > th dose independent rect. 11 10
987 120.77 temperature 10.0 270 > th dose independent rect. 21 14
988 120.77 atmosphere 995.0 270 > th dose independent rect. 21 14
993 120.81 temperature 30.0 270 < th dose dependent rect. 3 2
995 120.82 temperature 15.0 10 > th dose independent rect. 14 19
1000 120.88 radiation 1.0 10 < th dose dependent sin 11 NA