BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0244100 Os06g0244100|AK100071
         (675 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G53200.1  | chr1:19840486-19843169 REVERSE LENGTH=614          101   1e-21

>AT1G53200.1 | chr1:19840486-19843169 REVERSE LENGTH=614
          Length = 613

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 7/216 (3%)

Query: 456 EKICHSSTTALPFRLRGRLLEYFDQNQVSIISSCYAEALRRDPTCTYSMERLTRLHRKGY 515
           E++C+      PFR++  ++E F +N   +++ CY + L+ DP C  ++++L  +  +  
Sbjct: 396 EEMCNKIHDVKPFRIKALMMEKFHRNS-DMLAKCYEDILKIDPCCITTLKKLIGMCLEDE 454

Query: 516 YNTIELLEAIALHLDSVNGKPCIWEELVSCFLRLFSEWTTD-YGDCMSCNVQGDATFTAS 574
           Y+   L E IALH+++   +P IW+EL SCF   F     D    C+  +       T S
Sbjct: 455 YSRESLTEMIALHVEASFPEPEIWKELASCFSNFFENLDEDRLSVCLDGSEDKRNPQTYS 514

Query: 575 SKFSCVFFEQNTRETWKVRCTWWMNRHFSQSICTSE----TLTGDXXXXXXXXXXXXHLF 630
            +++    +  T+ +W +R  WW+NRHFS  +  +E    TLTGD            +++
Sbjct: 515 VRYNPT-PKTFTKTSWTLRAKWWLNRHFSPQMLETEIKNVTLTGDWEMMTYKAACASYIY 573

Query: 631 GPEFEYVEAVEGYLSGQKADDEIAFLSRNMQNSVRL 666
           G EF YV  V   L      +   FL  +  N  ++
Sbjct: 574 GREFGYVTKVYELLKSSNKREFFKFLREHRVNGNKM 609



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,212,511
Number of extensions: 456679
Number of successful extensions: 905
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 902
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 570
Effective length of database: 8,227,889
Effective search space: 4689896730
Effective search space used: 4689896730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)