BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0244100 Os06g0244100|AK100071
         (675 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0244100  Tetratricopeptide-like helical domain containi...  1129   0.0  

>Os06g0244100 Tetratricopeptide-like helical domain containing protein
          Length = 675

 Score = 1129 bits (2921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/675 (82%), Positives = 557/675 (82%)

Query: 1   MARXXXXXXXXXXKREPDGATAAVSDAYXXXXXXXXXXXXXXXXXXXXXXXXXAMSSTRD 60
           MAR          KREPDGATAAVSDAY                         AMSSTRD
Sbjct: 1   MARPPSPSPVVPVKREPDGATAAVSDAYTPRPPLRKRRRLPSTPTQPLLLTPQAMSSTRD 60

Query: 61  SFAGERSGLAPASVPTSVKRELXXXXXXXXXXXXXXXXKAVSVAEGNLQPRKTALAELPT 120
           SFAGERSGLAPASVPTSVKREL                KAVSVAEGNLQPRKTALAELPT
Sbjct: 61  SFAGERSGLAPASVPTSVKRELGADGDGDGDGDRDARGKAVSVAEGNLQPRKTALAELPT 120

Query: 121 XXXXXXXXXXXXHELVRSHRWGDAAGVISALVSGTRHPESFDEMRSVFAVGMEIHRRLAE 180
                       HELVRSHRWGDAAGVISALVSGTRHPESFDEMRSVFAVGMEIHRRLAE
Sbjct: 121 LLANRRRLDRLLHELVRSHRWGDAAGVISALVSGTRHPESFDEMRSVFAVGMEIHRRLAE 180

Query: 181 NSGIQQNTRSRYYLRTQKLYDVWMRRLMWLPTCERKYMVKLELALFYLSQGCIDSAYNTT 240
           NSGIQQNTRSRYYLRTQKLYDVWMRRLMWLPTCERKYMVKLELALFYLSQGCIDSAYNTT
Sbjct: 181 NSGIQQNTRSRYYLRTQKLYDVWMRRLMWLPTCERKYMVKLELALFYLSQGCIDSAYNTT 240

Query: 241 KTLIAKDGLKTPIVNLIHGLISYDNWYSGLPEDMQLEEFDVYCESHTVSMATHHCDENGQ 300
           KTLIAKDGLKTPIVNLIHGLISYDNWYSGLPEDMQLEEFDVYCESHTVSMATHHCDENGQ
Sbjct: 241 KTLIAKDGLKTPIVNLIHGLISYDNWYSGLPEDMQLEEFDVYCESHTVSMATHHCDENGQ 300

Query: 301 QDTSDDNCXXXXXXXXXXXXXXXXINNWNIDKQRKFPEKPGFVHSAREDDSVGSQVDEKM 360
           QDTSDDNC                INNWNIDKQRKFPEKPGFVHSAREDDSVGSQVDEKM
Sbjct: 301 QDTSDDNCSIDADSSSPGCSSKSSINNWNIDKQRKFPEKPGFVHSAREDDSVGSQVDEKM 360

Query: 361 VDTDFRSVFFNTANSPTCGLEKSLLPLRLKHSDGTPNACFDSYWKYKSTPNAFYEDAEKC 420
           VDTDFRSVFFNTANSPTCGLEKSLLPLRLKHSDGTPNACFDSYWKYKSTPNAFYEDAEKC
Sbjct: 361 VDTDFRSVFFNTANSPTCGLEKSLLPLRLKHSDGTPNACFDSYWKYKSTPNAFYEDAEKC 420

Query: 421 LRVALYSTXXXXXXXXXXXXXXXXXXXXXXXXXXXEKICHSSTTALPFRLRGRLLEYFDQ 480
           LRVALYST                           EKICHSSTTALPFRLRGRLLEYFDQ
Sbjct: 421 LRVALYSTPPIMAALLPLIQILLLGDKLKDALAELEKICHSSTTALPFRLRGRLLEYFDQ 480

Query: 481 NQVSIISSCYAEALRRDPTCTYSMERLTRLHRKGYYNTIELLEAIALHLDSVNGKPCIWE 540
           NQVSIISSCYAEALRRDPTCTYSMERLTRLHRKGYYNTIELLEAIALHLDSVNGKPCIWE
Sbjct: 481 NQVSIISSCYAEALRRDPTCTYSMERLTRLHRKGYYNTIELLEAIALHLDSVNGKPCIWE 540

Query: 541 ELVSCFLRLFSEWTTDYGDCMSCNVQGDATFTASSKFSCVFFEQNTRETWKVRCTWWMNR 600
           ELVSCFLRLFSEWTTDYGDCMSCNVQGDATFTASSKFSCVFFEQNTRETWKVRCTWWMNR
Sbjct: 541 ELVSCFLRLFSEWTTDYGDCMSCNVQGDATFTASSKFSCVFFEQNTRETWKVRCTWWMNR 600

Query: 601 HFSQSICTSETLTGDXXXXXXXXXXXXHLFGPEFEYVEAVEGYLSGQKADDEIAFLSRNM 660
           HFSQSICTSETLTGD            HLFGPEFEYVEAVEGYLSGQKADDEIAFLSRNM
Sbjct: 601 HFSQSICTSETLTGDCKLLASKAACACHLFGPEFEYVEAVEGYLSGQKADDEIAFLSRNM 660

Query: 661 QNSVRLLQTLEGLTS 675
           QNSVRLLQTLEGLTS
Sbjct: 661 QNSVRLLQTLEGLTS 675



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.132    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,680,133
Number of extensions: 666248
Number of successful extensions: 1213
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1209
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 567
Effective length of database: 11,396,689
Effective search space: 6461922663
Effective search space used: 6461922663
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)